FastQCFastQC Report
Thu 10 Oct 2024
CHILD13_R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCHILD13_R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8231
Sequences flagged as poor quality0
Sequence length71-301
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT2132.587777912768801No Hit
CCTACGGGTGGCTGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT1902.3083464949580854No Hit
CCTACGGGAGGCTGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT1601.9438707325962823No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT1581.9195723484388287No Hit
CCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGAGAGCCTGAA1441.749483659336654No Hit
CCTACGGGGGGCTGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT1431.7373344672579272No Hit
CCTACGGGTGGCTGCAGTGAGGAATATTGGTCAATGGGCGAGAGCCTGAA1261.5307982019195723No Hit
CCTACGGGGGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT1211.4700522415259385No Hit
CCTACGGGCGGCTGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT1021.23921759203013No Hit
CCTACGGGGGGCAGCAGTGAGGAATATTGGTCAATGGGCGAGAGCCTGAA1001.2149192078726765No Hit
CCTACGGGCGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT1001.2149192078726765No Hit
CCTACGGGTGGCAGCAGTGAGGAATATTGGTCAATGGGCGAGAGCCTGAA971.178471631636496No Hit
CCTACGGGAGGCTGCAGTGAGGAATATTGGTCAATGGGCGAGAGCCTGAA911.1055764791641356No Hit
CCTACGGGTGGCTGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGAT891.081278095006682No Hit
CCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGAT851.0326813266917751No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGAT760.923338597983234No Hit
CCTACGGGTGGCTGCAGTGAGGAATATTGGTCAATGGCCGAGAGGCTGAA700.8504434455108736No Hit
CCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAGAGTCTGAA700.8504434455108736No Hit
CCTACGGGGGGCTGCAGTGAGGAATATTGGTCAATGGGCGAGAGCCTGAA640.7775482930385129No Hit
CCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGCTGAA640.7775482930385129No Hit
CCTACGGGAGGCTGCAGTGAGGAATATTGGTCAATGGCCGAGAGGCTGAA630.7653991009597861No Hit
CCTACGGGTGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGCTGAA610.7411007168023327No Hit
CCTACGGGGGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGCTGAA580.7046531405661524No Hit
CCTACGGGAGGCTGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGAT560.6803547564086988No Hit
CCTACGGGTGGCAGCAGTGAGGAATATTGGTCAATGGACGAGAGTCTGAA550.6682055643299721No Hit
CCTACGGGGGGCTGCAGTGAGGAATATTGGTCAATGGCCGAGAGGCTGAA530.6439071801725186No Hit
CCTACGGGCGGCAGCAGTGAGGAATATTGGTCAATGGGCGAGAGCCTGAA500.6074596039363382No Hit
CCTACGGGGGGCAGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGAT490.5953104118576115No Hit
CCTACGGGCGGCTGCAGTGAGGAATATTGGTCAATGGGCGAGAGCCTGAA480.5831612197788847No Hit
CCTACGGGTGGCTGCAGTGAGGAATATTGGTCAATGGACGAGAGTCTGAA480.5831612197788847No Hit
CCTACGGGAGGCTGCAGTGAGGAATATTGGTCAATGGACGAGAGTCTGAA470.5710120277001579No Hit
CCTACGGGCGGCTGCAGTGAGGAATATTGGTCAATGGCCGAGAGGCTGAA410.49811687522779735No Hit
CCTACGGGGGGCAGCAGTGAGGAATATTGGTCAATGGACGAGAGTCTGAA410.49811687522779735No Hit
CCTACGGGCGGCAGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGAT410.49811687522779735No Hit
CCTACGGGGGGCTGCAGTGAGGAATATTGGTCAATGGACGAGAGTCTGAA390.47381849107034385No Hit
CCTACGGGGGGCTGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGAT370.4495201069128903No Hit
CCTACGGGCGGCTGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGAT360.4373709148341635No Hit
CCTACGGGCGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGCTGAA310.3766249544405297No Hit
CCTACGGGTGGCTGCAGTGGGGAATCTTCCGCAATGGACGAAAGTCTGAC270.3280281861256226No Hit
CCTACGGGGGGCAGCAGTGGGGAATCTTCCGCAATGGACGAAAGTCTGAC270.3280281861256226No Hit
CCTACGGGAGGCAGCAGTGGGGAATCTTCCGCAATGGACGAAAGTCTGAC260.3158789940468959No Hit
CCTACGGGTGGCTGCAGTGGGGAACACTGCACAATGGGGGAAACCCTGAT260.3158789940468959No Hit
CCTACGGGAGGCTGCAGTGGGGAATCTTCCGCAATGGACGAAAGTCTGAC250.3037298019681691No Hit
CCTACGGGTGGCAGCAGTGGGGAATCTTCCGCAATGGACGAAAGTCTGAC250.3037298019681691No Hit
CCTACGGGTGGCAGCAGTGGGGAACACTGCACAATGGGGGAAACCCTGAT240.29158060988944234No Hit
CCTACGGGCGGCTGCAGTGGGGAATCTTCCGCAATGGACGAAAGTCTGAC240.29158060988944234No Hit
CCTACGGGAGGCAGCAGTGGGGAACACTGCACAATGGGGGAAACCCTGAT230.27943141781071557No Hit
CCTACGGGGGGCTGCAGTGGGGAATCTTCCGCAATGGACGAAAGTCTGAC220.2672822257319888No Hit
CCTACGGGCGGCAGCAGTGAGGAATATTGGTCAATGGACGAGAGTCTGAA220.2672822257319888No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGGGCAATGGGCGCAAGCCTGAC190.2308346494958085No Hit
CCTACGGGGGGCTGCAGTGGGGAACACTGCACAATGGGGGAAACCCTGAT190.2308346494958085No Hit
CCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGCAAGCCTGAC180.21868545741708176No Hit
CCTACGGGAGGCTGCAGTGGGGGATATTGGACAATGGGGGAAACCCTGAT180.21868545741708176No Hit
CCTACGGGAGGCTGCAGTGGGGAACACTGCACAATGGGGGAAACCCTGAT180.21868545741708176No Hit
CCTACGGGCGGCTGCAGTGAGGAATATTGGTCAATGGACGAGAGTCTGAA180.21868545741708176No Hit
CCTACGGGTGGCTGCAGTGGGGAACACTGCACAATGGGCGAAAGCCTGAT170.20653626533835498No Hit
CCTACGGGTGGCAGCAGTGAGGAATATTGGTCAATGGTCGGCAGACTGAA170.20653626533835498No Hit
CCTACGGGTGGCAGCAGTGGGGGATATTGCGCAATGGGGGCAACCCTGAC170.20653626533835498No Hit
CCTACGGGAGGCTGCAGTGAGGAATATTGGTCAATGGTCGGCAGACTGAA170.20653626533835498No Hit
CCTACGGGAGGCAGCAGTGGGGAACATTGCACAATGGGGGAAACCCTGAT160.19438707325962823No Hit
CCTACGGGAGGCAGCAGTGAGGAACACTGGTCAATGGGCGAGAGCCTGAA160.19438707325962823No Hit
CCTACGGGTGGCAGCAGTGGGGAACATTGCACAATGGGGGAAACCCTGAT160.19438707325962823No Hit
CCTACGGGAGGCTGCAGTGAGGAATATTGGTCAATGGACGCAAGTCTGAA140.1700886891021747No Hit
CCTACGGGTGGCTGCAGTGAGGAATATTGGTCAATGGTCGGCAGACTGAA140.1700886891021747No Hit
CCTACGGGGGGCAGCAGTGAGGAACACTGGTCAATGGGCGAGAGCCTGAA130.15793949702344795No Hit
CCTACGGGTGGCTGCAGTGGGGAACATTGCACAATGGGGGAAACCCTGAT130.15793949702344795No Hit
CCTACGGGGGGCTGCAGTGGGGAATATTGGGCAATGGGCGCAAGCCTGAC130.15793949702344795No Hit
CCTACGCGTGGCTGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGAT130.15793949702344795No Hit
CCTACGGGTGGCTGCAGTGGGGGATATTGCGCAATGGGGGCAACCCTGAC130.15793949702344795No Hit
CCTACGGGTGGCTGCAGTGGGGAATATTGGGCAATGGGCGCAAGCCTGAC130.15793949702344795No Hit
CCTACGGGCGGCTGCAGTGAGGAATATTGGTCAATGGTCGGCAGACTGAA120.14579030494472117No Hit
CCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGCAAGTCTGAA120.14579030494472117No Hit
CCTACGGGTGGCAGCAGTAGGGAATTTTCGGCAATGGGGGAAACCCTGAC120.14579030494472117No Hit
CCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGTCGGCAGACTGAA120.14579030494472117No Hit
CCTACGGGTGGCAGCAGTGGGGGATATTGGACAATGGGGGAAACCCTGAT120.14579030494472117No Hit
CCTACGGGGGGCTGCAGTGAGGAATATTGGTCAATGGACGCGAGTCTGAA120.14579030494472117No Hit
CCTACGGGAGGCAGCAGTGGGGGATATTGCGCAATGGGGGCAACCCTGAC110.1336411128659944No Hit
CCTACGGGAGGCTGCAGTGAGGAATATTGGTCAATGGGCGCAGGCCTGAA110.1336411128659944No Hit
CCTACGGGTGGCTGCAGTGAGGAATATTGGTCAATGGACGCAAGTCTGAA110.1336411128659944No Hit
CCTACGGGGGGCTGCAGTGGGGAACATTGCACAATGGGGGAAACCCTGAT110.1336411128659944No Hit
CCTACGGGTGGCTGCAGTGAGGAACACTGGTCAATGGCCGAGAGGCTGAA110.1336411128659944No Hit
CCTACGGGTGGCTGCAGTGGGGAATATTGCACAATGGAGGAAACTCTGAT110.1336411128659944No Hit
CCTACGGGAGGCTGCAGTGGGGAATATTGGGCAATGGGCGCAAGCCTGAC110.1336411128659944No Hit
CCTACGGGTGGCAGCAGTGGGGAATACTGCACAATGGGGGAAACCCTGAT110.1336411128659944No Hit
CCTACGGGCGGCAGCAGTGGGGAATCTTCCGCAATGGACGAAAGTCTGAC110.1336411128659944No Hit
CCTACGGGGGGCAGCAGTGAGGAATATTGGTCAATGGTCGGCAGACTGAA100.12149192078726764No Hit
CCTACGGGGGGCAGCAGTGGGGAATATTGGGCAATGGGCGCAAGCCTGAC100.12149192078726764No Hit
CCTACGGGGGGCAGCAGTGGGGAACACTGCACAATGGGGGAAACCCTGAT100.12149192078726764No Hit
CCTACGGGTGGCTGCAGTGGGGGATATTGGACAATGGGGGAAACCCTGAT100.12149192078726764No Hit
CCTACGGGAGGCTGCAGTGGGGAACATTGCACAATGGGGGAAACCCTGAT100.12149192078726764No Hit
CCTACGGGTGGCTGCAGTGGGGAATATTGCGCAATGGGGGCAACCCTGAC100.12149192078726764No Hit
CCTACGGGCGGCAGCAGTGGGGAACACTGCACAATGGGGGAAACCCTGAT100.12149192078726764No Hit
CCTACGGGGGGCAGCAGTAGGGAATTTTCGGCAATGGGGGAAACCCTGAC100.12149192078726764No Hit
CCTACGGGTGGCTGCAGTGGGGAATATTGCGCAATGGGGGAAACCCTGAC100.12149192078726764No Hit
CCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGCGAGTCTGAA90.10934272870854088No Hit
CCTACGGGAGGCTGCAGTGAGGAACACTGGTCAATGGGCGAGAGCCTGAA90.10934272870854088No Hit
CCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGCGCAAGCCTGAT90.10934272870854088No Hit
CCTACGGGTGGCAGCAGTGGGGAATATTGCGCAATGGGGGCAACCCTGAC90.10934272870854088No Hit
CCTACGGGCGGCTGCAGTGGGGAACATTGCACAATGGGGGAAACCCTGAT90.10934272870854088No Hit
CCTACGGGTGGCTGCAGTGAGGAATATTGGTCAATGGGCGCAGGCCTGAA90.10934272870854088No Hit
CCTACGGGCGGCAGCAGTGGGGAACATTGCACAATGGGGGAAACCCTGAT90.10934272870854088No Hit
CCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGAGGGAACTCTGAT90.10934272870854088No Hit
CCTACGGGAGGCAGCAGTGAGGAACACTGGTCAATGGACGAGAGTCGGAA90.10934272870854088No Hit
CCTACGGGTGGCTGCAGTAGGGAATTTTCGGCAATGGGGGAAACCCTGAC90.10934272870854088No Hit
CCTACGGGCGGCAGCAGTGAGGAACACTGGTCAATGGGCGAGAGCCTGAA90.10934272870854088No Hit
CCTACGGGGGGCTGCAGTGAGGAATATTGGTCAATGGACGCAAGTCTGAA90.10934272870854088No Hit
CCTACGGGGGGCTGCAGTGAGGAATATTGGTCAATGGTCGGCAGACTGAA90.10934272870854088No Hit
CCTACGGGTGGCAGCAGTGAGGAATATTGGTCAATGGACGCGAGTCTGAA90.10934272870854088No Hit
CCTACGGGCGGCTGCAGTGGGGGATATTGGACAATGGGGGAAACCCTGAT90.10934272870854088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)