FastQCFastQC Report
Thu 10 Oct 2024
CHILD24_cleaned_R2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCHILD24_cleaned_R2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4219
Sequences flagged as poor quality0
Sequence length15-91
%GC57

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTCGTCGGCTAGC80.18961839298411945No Hit
GACTCCACGGCTAGC70.16591609386110454No Hit
GCCTCCTCGGCTCGC70.16591609386110454No Hit
GACTCCACGGCTCGC60.1422137947380896No Hit
GCCTCCTCGGCTAGC60.1422137947380896No Hit
GCCTCCACGGCTAGC60.1422137947380896No Hit
GCCTCGTCGGCTCTC50.11851149561507467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)