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"read1_after_filtering": { "total_reads": 116755, "total_bases": 35056538, "q20_bases": 34484278, "q30_bases": 33084692, "total_cycles": 301, "quality_curves": { 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"total_cycles": 301, "quality_curves": { 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"CGGAA":6908, "CGGAT":16306, "CGGAC":83341, "CGGAG":4834, "CGGTA":5873, "CGGTT":93650, "CGGTC":4837, "CGGTG":2621, "CGGCA":5569, "CGGCT":97288, "CGGCC":8674, "CGGCG":8070, "CGGGA":6317, "CGGGT":45113, "CGGGC":7715, "CGGGG":23265, "GAAAA":82515, "GAAAT":3988, "GAAAC":1516, "GAAAG":3052, "GAATA":2400, "GAATT":29258, "GAATC":618, "GAATG":3338, "GAACA":7024, "GAACT":3828, "GAACC":2712, "GAACG":2079, "GAAGA":1771, "GAAGT":3240, "GAAGC":1573, "GAAGG":3047, "GATAA":14215, "GATAT":4062, "GATAC":3465, "GATAG":2664, "GATTA":5073, "GATTT":10571, "GATTC":2896, "GATTG":1569, "GATCA":785, "GATCT":7670, "GATCC":2886, "GATCG":1155, "GATGA":373, "GATGT":1649, "GATGC":81904, "GATGG":5381, "GACAA":81190, "GACAT":2123, "GACAC":2734, "GACAG":4321, "GACTA":115563, "GACTT":94643, "GACTC":4254, "GACTG":1974, "GACCA":86746, "GACCT":5193, "GACCC":2772, "GACCG":3287, "GACGA":1288, "GACGT":3382, "GACGC":3575, "GACGG":3942, "GAGAA":937, "GAGAT":832, "GAGAC":1893, "GAGAG":85429, "GAGTA":1260, "GAGTT":93573, "GAGTC":924, "GAGTG":4003, "GAGCA":3272, "GAGCT":2132, "GAGCC":194340, "GAGCG":3176, "GAGGA":300, "GAGGT":1085, "GAGGC":2655, "GAGGG":78300, "GTAAA":11084, "GTAAT":9311, "GTAAC":1491, "GTAAG":11763, "GTATA":2685, "GTATT":102285, "GTATC":117615, "GTATG":759, "GTACA":1295, "GTACT":7588, "GTACC":3636, "GTACG":1454, "GTAGA":1616, "GTAGT":84703, "GTAGC":2710, "GTAGG":5067, "GTTAA":98083, "GTTAT":7311, "GTTAC":18414, "GTTAG":90664, "GTTTA":6086, "GTTTT":18033, "GTTTC":102541, "GTTTG":31260, "GTTCA":6299, "GTTCT":94132, "GTTCC":184266, "GTTCG":87949, "GTTGA":19035, "GTTGT":3031, "GTTGC":93027, "GTTGG":6834, "GTCAA":1999, "GTCAT":1397, "GTCAC":2320, "GTCAG":113281, "GTCTA":6322, "GTCTT":9521, "GTCTC":4841, "GTCTG":1764, "GTCCA":21011, "GTCCT":2154, "GTCCC":6120, "GTCCG":1858, "GTCGA":477, "GTCGT":4615, "GTCGC":11380, "GTCGG":3917, "GTGAA":386, "GTGAT":675, "GTGAC":2379, "GTGAG":1305, "GTGTA":413, "GTGTT":111018, "GTGTC":8092, "GTGTG":295, "GTGCA":1527, "GTGCT":13301, "GTGCC":8472, "GTGCG":2543, "GTGGA":1034, "GTGGT":2335, "GTGGC":6942, "GTGGG":1836, "GCAAA":1304, "GCAAT":7820, "GCAAC":3512, "GCAAG":3400, "GCATA":3425, "GCATT":112944, "GCATC":8523, "GCATG":2539, "GCACA":6743, "GCACT":102305, "GCACC":18369, "GCACG":88544, "GCAGA":87813, "GCAGT":94280, "GCAGC":3815, "GCAGG":8138, "GCTAA":1803, "GCTAT":3185, "GCTAC":199005, "GCTAG":3321, "GCTTA":7211, "GCTTT":284360, "GCTTC":7851, "GCTTG":93692, "GCTCA":2209, "GCTCT":9455, "GCTCC":45439, "GCTCG":84216, "GCTGA":1461, "GCTGT":2600, "GCTGC":98045, "GCTGG":101693, "GCCAA":5556, "GCCAT":4375, "GCCAC":194999, "GCCAG":7080, "GCCTA":22991, "GCCTT":116248, "GCCTC":114712, "GCCTG":92119, "GCCCA":102585, "GCCCT":9700, "GCCCC":23160, "GCCCG":10589, "GCCGA":81140, "GCCGT":7867, "GCCGC":110467, "GCCGG":3236, "GCGAA":2188, "GCGAT":1077, "GCGAC":2494, "GCGAG":1132, "GCGTA":1126, "GCGTT":2674, "GCGTC":103584, "GCGTG":2239, "GCGCA":2731, "GCGCT":80678, "GCGCC":7954, "GCGCG":3349, "GCGGA":3188, "GCGGT":4515, "GCGGC":90454, "GCGGG":9032, "GGAAA":5341, "GGAAT":26515, "GGAAC":1518, "GGAAG":753, "GGATA":12943, "GGATT":10650, "GGATC":653, "GGATG":1593, "GGACA":81100, "GGACT":5010, "GGACC":2365, "GGACG":3203, "GGAGA":1146, "GGAGT":88971, "GGAGC":1067, "GGAGG":1280, "GGTAA":1182, "GGTAT":118856, "GGTAC":1531, "GGTAG":6429, "GGTTA":88840, "GGTTT":10463, "GGTTC":1851, "GGTTG":22922, "GGTCA":1436, "GGTCT":1365, "GGTCC":1635, "GGTCG":3843, "GGTGA":397, "GGTGT":109656, "GGTGC":8296, "GGTGG":8113, "GGCAA":2149, "GGCAT":1311, "GGCAC":95935, "GGCAG":6416, "GGCTA":2114, "GGCTT":90496, "GGCTC":5540, "GGCTG":97541, "GGCCA":7289, "GGCCT":2869, "GGCCC":11100, "GGCCG":9417, "GGCGA":3141, "GGCGT":2064, "GGCGC":2010, "GGCGG":6110, "GGGAA":5073, "GGGAT":7558, "GGGAC":4422, "GGGAG":1308, "GGGTA":114774, "GGGTT":18296, "GGGTC":887, "GGGTG":6391, "GGGCA":1347, "GGGCT":88027, "GGGCC":3363, "GGGCG":1116, "GGGGA":2931, "GGGGT":47801, "GGGGC":5257, "GGGGG":40316 }, "overrepresented_sequences": { } }, "command": "fastp -i /data/MicrobiomaFrangos/input/JVMS2_R1.fastq -I /data/MicrobiomaFrangos/input/JVMS2_R2.fastq -o /data/MicrobiomaFrangos/output/fastp/JVMS2_cleaned_R1.fastq -O /data/MicrobiomaFrangos/output/fastp/JVMS2_cleaned_R2.fastq --disable_adapter_trimming --average_qual 10 --cut_right --cut_right_window_size 5 --cut_right_mean_quality 10 --html /data/MicrobiomaFrangos/output/fastp/JVMS2_R1.html --json /data/MicrobiomaFrangos/output/fastp/JVMS2_R1.json " }