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"CCCCC":14778, "CCCCG":12303, "CCCGA":7405, "CCCGT":10509, "CCCGC":8768, "CCCGG":28914, "CCGAA":42103, "CCGAT":80906, "CCGAC":5442, "CCGAG":71755, "CCGTA":13691, "CCGTT":4632, "CCGTC":8298, "CCGTG":1505, "CCGCA":4624, "CCGCT":140405, "CCGCC":254183, "CCGCG":109423, "CCGGA":121529, "CCGGT":46541, "CCGGC":11105, "CCGGG":39610, "CGAAA":523, "CGAAT":2290, "CGAAC":1385, "CGAAG":42802, "CGATA":3929, "CGATT":2919, "CGATC":1662, "CGATG":75200, "CGACA":3434, "CGACT":3210, "CGACC":1674, "CGACG":1952, "CGAGA":2146, "CGAGT":1403, "CGAGC":121204, "CGAGG":71665, "CGTAA":2331, "CGTAT":116405, "CGTAC":4021, "CGTAG":105723, "CGTTA":4545, "CGTTT":5535, "CGTTC":3784, "CGTTG":2901, "CGTCA":128373, "CGTCT":8603, "CGTCC":3613, "CGTCG":4410, "CGTGA":1075, "CGTGT":933, "CGTGC":7412, "CGTGG":2582, "CGCAA":3450, "CGCAT":131745, "CGCAC":10784, "CGCAG":2983, "CGCTA":246484, "CGCTT":235859, "CGCTC":82084, "CGCTG":6973, "CGCCA":131747, "CGCCT":257562, "CGCCC":120007, "CGCCG":7777, "CGCGA":700, "CGCGT":1938, "CGCGC":6154, "CGCGG":110257, "CGGAA":4150, "CGGAT":13484, "CGGAC":109164, "CGGAG":4501, "CGGTA":3140, "CGGTT":125596, "CGGTC":3461, "CGGTG":1974, "CGGCA":3567, "CGGCT":114802, "CGGCC":5102, "CGGCG":5753, "CGGGA":4567, "CGGGT":49645, "CGGGC":5098, "CGGGG":21117, "GAAAA":73880, "GAAAT":1562, "GAAAC":2052, "GAAAG":2150, "GAATA":1329, "GAATT":17722, "GAATC":905, "GAATG":527, "GAACA":1919, "GAACT":2397, "GAACC":37952, "GAACG":1998, "GAAGA":1308, "GAAGT":3655, "GAAGC":936, "GAAGG":40788, "GATAA":12357, "GATAT":2843, "GATAC":2057, "GATAG":2026, "GATTA":2958, "GATTT":5094, "GATTC":1762, "GATTG":1088, "GATCA":698, "GATCT":2447, "GATCC":2044, "GATCG":794, "GATGA":349, "GATGT":1467, "GATGC":113232, "GATGG":3440, "GACAA":108381, "GACAT":1878, "GACAC":2151, "GACAG":4942, "GACTA":132649, "GACTT":118484, "GACTC":3232, "GACTG":1099, "GACCA":115975, "GACCT":5806, "GACCC":1933, "GACCG":1990, "GACGA":1206, "GACGT":3383, "GACGC":1433, "GACGG":1280, "GAGAA":905, "GAGAT":619, "GAGAC":2737, "GAGAG":113279, "GAGTA":698, "GAGTT":119513, "GAGTC":1111, "GAGTG":1542, "GAGCA":2236, "GAGCT":2910, "GAGCC":280959, "GAGCG":2031, "GAGGA":205, "GAGGT":1111, "GAGGC":2725, "GAGGG":71129, "GTAAA":6602, "GTAAT":7346, "GTAAC":805, "GTAAG":5166, "GTATA":2513, "GTATT":119370, "GTATC":135238, "GTATG":634, "GTACA":940, "GTACT":6803, "GTACC":1537, "GTACG":993, "GTAGA":1629, "GTAGT":106683, "GTAGC":3626, "GTAGG":3720, "GTTAA":79464, "GTTAT":2690, "GTTAC":11951, "GTTAG":108697, "GTTTA":4685, "GTTTT":11441, "GTTTC":124784, "GTTTG":22158, "GTTCA":41236, "GTTCT":118069, "GTTCC":202464, "GTTCG":117526, "GTTGA":50728, "GTTGT":2636, "GTTGC":124270, "GTTGG":3468, "GTCAA":1330, "GTCAT":1477, "GTCAC":1238, "GTCAG":131485, "GTCTA":5822, "GTCTT":5888, "GTCTC":2126, "GTCTG":1803, "GTCCA":11407, "GTCCT":4006, "GTCCC":3841, "GTCCG":1498, "GTCGA":448, "GTCGT":3958, "GTCGC":7172, "GTCGG":1120, "GTGAA":456, "GTGAT":427, "GTGAC":1683, "GTGAG":721, "GTGTA":375, "GTGTT":128850, "GTGTC":4082, "GTGTG":214, "GTGCA":1134, "GTGCT":6457, "GTGCC":9016, "GTGCG":1443, "GTGGA":878, "GTGGT":2187, "GTGGC":7126, "GTGGG":1202, "GCAAA":1247, "GCAAT":42118, "GCAAC":5820, "GCAAG":3608, "GCATA":2097, "GCATT":131992, "GCATC":2187, "GCATG":2261, "GCACA":3589, "GCACT":159280, "GCACC":16337, "GCACG":107915, "GCAGA":115878, "GCAGT":82784, "GCAGC":3286, "GCAGG":7281, "GCTAA":981, "GCTAT":2361, "GCTAC":249013, "GCTAG":3002, "GCTTA":6447, "GCTTT":352560, "GCTTC":6314, "GCTTG":112646, "GCTCA":1264, "GCTCT":4023, "GCTCC":26327, "GCTCG":76479, "GCTGA":1523, "GCTGT":3127, "GCTGC":113916, "GCTGG":120075, "GCCAA":5770, "GCCAT":1693, "GCCAC":239414, "GCCAG":4530, "GCCTA":8881, "GCCTT":134937, "GCCTC":137867, "GCCTG":116212, "GCCCA":120583, "GCCCT":10026, "GCCCC":16354, "GCCCG":12429, "GCCGA":111564, "GCCGT":4518, "GCCGC":133973, "GCCGG":3125, "GCGAA":910, "GCGAT":625, "GCGAC":1569, "GCGAG":755, "GCGTA":1004, "GCGTT":2080, "GCGTC":123685, "GCGTG":1820, "GCGCA":1744, "GCGCT":73756, "GCGCC":7194, "GCGCG":2303, "GCGGA":2181, "GCGGT":3560, "GCGGC":108211, "GCGGG":7925, "GGAAA":3061, "GGAAT":15612, "GGAAC":1220, "GGAAG":374, "GGATA":11321, "GGATT":4775, "GGATC":278, "GGATG":1053, "GGACA":107496, "GGACT":3991, "GGACC":1912, "GGACG":3259, "GGAGA":1067, "GGAGT":118423, "GGAGC":1276, "GGAGG":1166, "GGTAA":794, "GGTAT":133764, "GGTAC":1106, "GGTAG":4011, "GGTTA":76798, "GGTTT":9678, "GGTTC":1874, "GGTTG":54263, "GGTCA":1127, "GGTCT":1674, "GGTCC":836, "GGTCG":2803, "GGTGA":396, "GGTGT":128625, "GGTGC":7622, "GGTGG":8093, "GGCAA":2305, "GGCAT":1142, "GGCAC":112492, "GGCAG":4912, "GGCTA":1774, "GGCTT":118491, "GGCTC":5244, "GGCTG":113929, "GGCCA":4852, "GGCCT":2356, "GGCCC":7760, "GGCCG":7303, "GGCGA":1354, "GGCGT":1715, "GGCGC":1781, "GGCGG":5642, "GGGAA":3197, "GGGAT":3099, "GGGAC":3697, "GGGAG":1237, "GGGTA":131806, "GGGTT":10627, "GGGTC":777, "GGGTG":6182, "GGGCA":1271, "GGGCT":77822, "GGGCC":3075, "GGGCG":964, "GGGGA":1354, "GGGGT":49942, "GGGGC":4695, "GGGGG":45691 }, "overrepresented_sequences": { } }, "command": "fastp -i /data/MicrobiomaFrangos/input/JPMS2_R1.fastq -I /data/MicrobiomaFrangos/input/JPMS2_R2.fastq -o /data/MicrobiomaFrangos/output/fastp/JPMS2_cleaned_R1.fastq -O /data/MicrobiomaFrangos/output/fastp/JPMS2_cleaned_R2.fastq --disable_adapter_trimming --average_qual 10 --cut_right --cut_right_window_size 5 --cut_right_mean_quality 10 --html /data/MicrobiomaFrangos/output/fastp/JPMS2_R1.html --json /data/MicrobiomaFrangos/output/fastp/JPMS2_R1.json " }