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"read1_after_filtering": { "total_reads": 201164, "total_bases": 60433049, "q20_bases": 59493646, "q30_bases": 57154339, "total_cycles": 301, "quality_curves": { 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"CGGAA":3583, "CGGAT":5354, "CGGAC":177519, "CGGAG":8203, "CGGTA":5969, "CGGTT":201449, "CGGTC":5534, "CGGTG":2198, "CGGCA":3412, "CGGCT":172900, "CGGCC":6419, "CGGCG":8972, "CGGGA":1842, "CGGGT":72666, "CGGGC":6171, "CGGGG":31096, "GAAAA":176973, "GAAAT":735, "GAAAC":1545, "GAAAG":1030, "GAATA":1437, "GAATT":9444, "GAATC":590, "GAATG":181, "GAACA":1877, "GAACT":917, "GAACC":11295, "GAACG":1738, "GAAGA":1381, "GAAGT":2688, "GAAGC":1120, "GAAGG":12227, "GATAA":3489, "GATAT":910, "GATAC":844, "GATAG":1808, "GATTA":4960, "GATTT":5472, "GATTC":1834, "GATTG":784, "GATCA":806, "GATCT":4443, "GATCC":2402, "GATCG":803, "GATGA":343, "GATGT":725, "GATGC":188280, "GATGG":5305, "GACAA":176757, "GACAT":2722, "GACAC":2735, "GACAG":3654, "GACTA":199159, "GACTT":188821, "GACTC":6037, "GACTG":1237, "GACCA":191187, "GACCT":3381, "GACCC":1738, "GACCG":1338, "GACGA":1850, "GACGT":4692, "GACGC":1721, "GACGG":2005, "GAGAA":1447, "GAGAT":775, "GAGAC":6159, "GAGAG":187449, "GAGTA":917, "GAGTT":199549, "GAGTC":1329, "GAGTG":1926, "GAGCA":557, "GAGCT":2312, "GAGCC":395194, "GAGCG":4896, "GAGGA":275, "GAGGT":871, "GAGGC":3222, "GAGGG":171984, "GTAAA":3338, "GTAAT":6663, "GTAAC":840, "GTAAG":2676, "GTATA":2421, "GTATT":181524, "GTATC":202702, "GTATG":726, "GTACA":997, "GTACT":5501, "GTACC":1995, "GTACG":1546, "GTAGA":1698, "GTAGT":157274, "GTAGC":2738, "GTAGG":1691, "GTTAA":176658, "GTTAT":3134, "GTTAC":9782, "GTTAG":164079, "GTTTA":5613, "GTTTT":4478, "GTTTC":193489, "GTTTG":14538, "GTTCA":13112, "GTTCT":191208, "GTTCC":372128, "GTTCG":194007, "GTTGA":17116, "GTTGT":3113, "GTTGC":200669, "GTTGG":2064, "GTCAA":1495, "GTCAT":388, "GTCAC":1362, "GTCAG":197807, "GTCTA":1283, "GTCTT":9870, "GTCTC":1899, "GTCTG":961, "GTCCA":6270, "GTCCT":3154, "GTCCC":1984, "GTCCG":1640, "GTCGA":473, "GTCGT":6263, "GTCGC":6738, "GTCGG":1551, "GTGAA":107, "GTGAT":453, "GTGAC":227, "GTGAG":877, "GTGTA":380, "GTGTT":192689, "GTGTC":2018, "GTGTG":274, "GTGCA":1038, "GTGCT":9448, "GTGCC":3238, "GTGCG":4167, "GTGGA":951, "GTGGT":2379, "GTGGC":10844, "GTGGG":1525, "GCAAA":889, "GCAAT":13345, "GCAAC":4232, "GCAAG":2593, "GCATA":1032, "GCATT":196264, "GCATC":2304, "GCATG":2977, "GCACA":4684, "GCACT":201840, "GCACC":18662, "GCACG":162940, "GCAGA":190648, "GCAGT":177831, "GCAGC":3464, "GCAGG":6018, "GCTAA":1159, "GCTAT":1797, "GCTAC":386917, "GCTAG":3241, "GCTTA":3584, "GCTTT":567465, "GCTTC":8341, "GCTTG":177389, "GCTCA":1475, "GCTCT":4356, "GCTCC":14255, "GCTCG":170712, "GCTGA":1682, "GCTGT":1799, "GCTGC":169670, "GCTGG":181267, "GCCAA":6522, "GCCAT":1479, "GCCAC":374596, "GCCAG":7856, "GCCTA":3032, "GCCTT":201195, "GCCTC":198856, "GCCTG":188132, "GCCCA":184949, "GCCCT":6115, "GCCCC":12012, "GCCCG":15013, "GCCGA":182716, "GCCGT":3526, "GCCGC":205911, "GCCGG":3545, "GCGAA":400, "GCGAT":758, "GCGAC":1915, "GCGAG":1641, "GCGTA":1426, "GCGTT":3222, "GCGTC":196386, "GCGTG":4853, "GCGCA":2560, "GCGCT":170850, "GCGCC":6252, "GCGCG":2947, "GCGGA":3059, "GCGGT":5957, "GCGGC":163125, "GCGGG":13089, "GGAAA":4430, "GGAAT":6372, "GGAAC":1437, "GGAAG":334, "GGATA":2895, "GGATT":6125, "GGATC":306, "GGATG":1139, "GGACA":175171, "GGACT":4872, "GGACC":2415, "GGACG":4688, "GGAGA":1580, "GGAGT":198435, "GGAGC":1878, "GGAGG":1420, "GGTAA":1089, "GGTAT":202834, "GGTAC":1438, "GGTAG":4370, "GGTTA":177157, "GGTTT":10064, "GGTTC":2748, "GGTTG":25800, "GGTCA":1376, "GGTCT":824, "GGTCC":693, "GGTCG":5144, "GGTGA":431, "GGTGT":192554, "GGTGC":9212, "GGTGG":12433, "GGCAA":3143, "GGCAT":1499, "GGCAC":168856, "GGCAG":5504, "GGCTA":2002, "GGCTT":190135, "GGCTC":8311, "GGCTG":171395, "GGCCA":5476, "GGCCT":3456, "GGCCC":10776, "GGCCG":7316, "GGCGA":1638, "GGCGT":2621, "GGCGC":2898, "GGCGG":8453, "GGGAA":577, "GGGAT":4562, "GGGAC":5099, "GGGAG":1621, "GGGTA":198162, "GGGTT":7245, "GGGTC":1039, "GGGTG":9696, "GGGCA":1810, "GGGCT":181062, "GGGCC":6876, "GGGCG":1409, "GGGGA":4041, "GGGGT":73533, "GGGGC":9093, "GGGGG":54763 }, "overrepresented_sequences": { } }, "command": "fastp -i /data/MicrobiomaFrangos/input/JPFS2_R1.fastq -I /data/MicrobiomaFrangos/input/JPFS2_R2.fastq -o /data/MicrobiomaFrangos/output/fastp/JPFS2_cleaned_R1.fastq -O /data/MicrobiomaFrangos/output/fastp/JPFS2_cleaned_R2.fastq --disable_adapter_trimming --average_qual 10 --cut_right --cut_right_window_size 5 --cut_right_mean_quality 10 --html /data/MicrobiomaFrangos/output/fastp/JPFS2_R1.html --json /data/MicrobiomaFrangos/output/fastp/JPFS2_R1.json " }