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"overrepresented_sequences": { } }, "read1_after_filtering": { "total_reads": 232873, "total_bases": 69964812, "q20_bases": 68903894, "q30_bases": 66245682, "total_cycles": 301, "quality_curves": { 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"CGCGG":193618, "CGGAA":4097, "CGGAT":5330, "CGGAC":207747, "CGGAG":8422, "CGGTA":5259, "CGGTT":236376, "CGGTC":6742, "CGGTG":2485, "CGGCA":3794, "CGGCT":199755, "CGGCC":7727, "CGGCG":10391, "CGGGA":1993, "CGGGT":85062, "CGGGC":7289, "CGGGG":34215, "GAAAA":214424, "GAAAT":740, "GAAAC":1507, "GAAAG":1103, "GAATA":1713, "GAATT":8137, "GAATC":557, "GAATG":130, "GAACA":2110, "GAACT":828, "GAACC":6876, "GAACG":1943, "GAAGA":1539, "GAAGT":3149, "GAAGC":1234, "GAAGG":7580, "GATAA":2903, "GATAT":868, "GATAC":932, "GATAG":1976, "GATTA":4163, "GATTT":4672, "GATTC":2221, "GATTG":867, "GATCA":948, "GATCT":3489, "GATCC":2719, "GATCG":948, "GATGA":419, "GATGT":828, "GATGC":218766, "GATGG":6442, "GACAA":207010, "GACAT":3313, "GACAC":3113, "GACAG":3884, "GACTA":230453, "GACTT":218495, "GACTC":5540, "GACTG":1524, "GACCA":224140, "GACCT":3512, "GACCC":1920, "GACCG":1545, "GACGA":2218, "GACGT":5679, "GACGC":1933, "GACGG":2231, "GAGAA":1713, "GAGAT":925, "GAGAC":5783, "GAGAG":219985, "GAGTA":1073, "GAGTT":233105, "GAGTC":1535, "GAGTG":2299, "GAGCA":563, "GAGCT":2736, "GAGCC":453693, "GAGCG":4034, "GAGGA":296, "GAGGT":945, "GAGGC":3682, "GAGGG":208177, "GTAAA":3562, "GTAAT":5904, "GTAAC":890, "GTAAG":2812, "GTATA":2711, "GTATT":207811, "GTATC":232985, "GTATG":924, "GTACA":1146, "GTACT":6035, "GTACC":2306, "GTACG":1796, "GTAGA":1911, "GTAGT":182897, "GTAGC":3030, "GTAGG":1948, "GTTAA":213537, "GTTAT":3742, "GTTAC":11070, "GTTAG":189710, "GTTTA":6696, "GTTTT":4780, "GTTTC":226209, "GTTTG":14253, "GTTCA":8775, "GTTCT":223865, "GTTCC":440440, "GTTCG":227690, "GTTGA":10835, "GTTGT":3741, "GTTGC":235941, "GTTGG":2295, "GTCAA":1775, "GTCAT":372, "GTCAC":1414, "GTCAG":229078, "GTCTA":1069, "GTCTT":10079, "GTCTC":2144, "GTCTG":1042, "GTCCA":4776, "GTCCT":3534, "GTCCC":1955, "GTCCG":1722, "GTCGA":596, "GTCGT":7442, "GTCGC":7959, "GTCGG":1775, "GTGAA":104, "GTGAT":465, "GTGAC":206, "GTGAG":952, "GTGTA":452, "GTGTT":224657, "GTGTC":1950, "GTGTG":306, "GTGCA":1247, "GTGCT":11142, "GTGCC":3387, "GTGCG":3197, "GTGGA":1094, "GTGGT":2917, "GTGGC":13255, "GTGGG":1907, "GCAAA":959, "GCAAT":8921, "GCAAC":4506, "GCAAG":3004, "GCATA":1209, "GCATT":227462, "GCATC":2431, "GCATG":3381, "GCACA":5387, "GCACT":229265, "GCACC":17988, "GCACG":187501, "GCAGA":223640, "GCAGT":212309, "GCAGC":3977, "GCAGG":6724, "GCTAA":1338, "GCTAT":1953, "GCTAC":450725, "GCTAG":3721, "GCTTA":3987, "GCTTT":660437, "GCTTC":9591, "GCTTG":202854, "GCTCA":1712, "GCTCT":5026, "GCTCC":13088, "GCTCG":205390, "GCTGA":1881, "GCTGT":2013, "GCTGC":195589, "GCTGG":210023, "GCCAA":7860, "GCCAT":1718, "GCCAC":435311, "GCCAG":7531, "GCCTA":3124, "GCCTT":232614, "GCCTC":231827, "GCCTG":218177, "GCCCA":214240, "GCCCT":6596, "GCCCC":13454, "GCCCG":15529, "GCCGA":213528, "GCCGT":4038, "GCCGC":238307, "GCCGG":4136, "GCGAA":360, "GCGAT":851, "GCGAC":2257, "GCGAG":2119, "GCGTA":1508, "GCGTT":3813, "GCGTC":227995, "GCGTG":3948, "GCGCA":2845, "GCGCT":204143, "GCGCC":6926, "GCGCG":3540, "GCGGA":3580, "GCGGT":7285, "GCGGC":188377, "GCGGG":15918, "GGAAA":5321, "GGAAT":4571, "GGAAC":1709, "GGAAG":408, "GGATA":2401, "GGATT":5515, "GGATC":371, "GGATG":1349, "GGACA":205112, "GGACT":5508, "GGACC":2738, "GGACG":5520, "GGAGA":1989, "GGAGT":231686, "GGAGC":2179, "GGAGG":1685, "GGTAA":1279, "GGTAT":233154, "GGTAC":1657, "GGTAG":5153, "GGTTA":214526, "GGTTT":11906, "GGTTC":3272, "GGTTG":21709, "GGTCA":1605, "GGTCT":906, "GGTCC":769, "GGTCG":6466, "GGTGA":467, "GGTGT":224478, "GGTGC":10827, "GGTGG":15502, "GGCAA":3782, "GGCAT":1669, "GGCAC":194449, "GGCAG":6377, "GGCTA":2285, "GGCTT":222832, "GGCTC":9911, "GGCTG":198208, "GGCCA":6572, "GGCCT":3899, "GGCCC":12826, "GGCCG":6548, "GGCGA":1945, "GGCGT":3001, "GGCGC":3309, "GGCGG":9799, "GGGAA":520, "GGGAT":3681, "GGGAC":5908, "GGGAG":1902, "GGGTA":229511, "GGGTT":8182, "GGGTC":1272, "GGGTG":11541, "GGGCA":2089, "GGGCT":219254, "GGGCC":6232, "GGGCG":1492, "GGGGA":3100, "GGGGT":84608, "GGGGC":8881, "GGGGG":56963 }, "overrepresented_sequences": { } }, "command": "fastp -i /data/MicrobiomaFrangos/input/JPFS1_R1.fastq -I /data/MicrobiomaFrangos/input/JPFS1_R2.fastq -o /data/MicrobiomaFrangos/output/fastp/JPFS1_cleaned_R1.fastq -O /data/MicrobiomaFrangos/output/fastp/JPFS1_cleaned_R2.fastq --disable_adapter_trimming --average_qual 10 --cut_right --cut_right_window_size 5 --cut_right_mean_quality 10 --html /data/MicrobiomaFrangos/output/fastp/JPFS1_R1.html --json /data/MicrobiomaFrangos/output/fastp/JPFS1_R1.json " }