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"total_reads": 127452, "total_bases": 38235258, "q20_bases": 35862049, "q30_bases": 30447925, "total_cycles": 301, "quality_curves": { 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"overrepresented_sequences": { } }, "read1_after_filtering": { "total_reads": 127003, "total_bases": 38138589, "q20_bases": 37537565, "q30_bases": 36053153, "total_cycles": 301, "quality_curves": { 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"total_reads": 127003, "total_bases": 37796035, "q20_bases": 35599577, "q30_bases": 30435258, "total_cycles": 301, "quality_curves": { 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"CGCGT":2015, "CGCGC":7893, "CGCGG":106083, "CGGAA":6297, "CGGAT":23604, "CGGAC":94706, "CGGAG":3393, "CGGTA":3033, "CGGTT":109720, "CGGTC":4543, "CGGTG":2529, "CGGCA":6858, "CGGCT":109850, "CGGCC":7461, "CGGCG":6946, "CGGGA":7569, "CGGGT":48643, "CGGGC":8391, "CGGGG":22955, "GAAAA":88924, "GAAAT":3732, "GAAAC":2806, "GAAAG":3794, "GAATA":1542, "GAATT":27723, "GAATC":720, "GAATG":1028, "GAACA":2686, "GAACT":4027, "GAACC":5095, "GAACG":2014, "GAAGA":1983, "GAAGT":3478, "GAAGC":742, "GAAGG":9071, "GATAA":23415, "GATAT":4999, "GATAC":3960, "GATAG":2979, "GATTA":2754, "GATTT":8245, "GATTC":2055, "GATTG":1294, "GATCA":793, "GATCT":4766, "GATCC":2547, "GATCG":1083, "GATGA":345, "GATGT":2137, "GATGC":93961, "GATGG":3123, "GACAA":93059, "GACAT":1800, "GACAC":2466, "GACAG":6787, "GACTA":126543, "GACTT":106065, "GACTC":2241, "GACTG":1829, "GACCA":97712, "GACCT":8868, "GACCC":2182, "GACCG":2417, "GACGA":1082, "GACGT":3101, "GACGC":3413, "GACGG":3447, "GAGAA":1084, "GAGAT":610, "GAGAC":1639, "GAGAG":95430, "GAGTA":756, "GAGTT":102102, "GAGTC":905, "GAGTG":3906, "GAGCA":4076, "GAGCT":2433, "GAGCC":226175, "GAGCG":1741, "GAGGA":215, "GAGGT":1151, "GAGGC":2368, "GAGGG":84924, "GTAAA":12700, "GTAAT":10062, "GTAAC":1086, "GTAAG":9697, "GTATA":2826, "GTATT":112188, "GTATC":126810, "GTATG":589, "GTACA":1027, "GTACT":8187, "GTACC":1617, "GTACG":1163, "GTAGA":1587, "GTAGT":100106, "GTAGC":4066, "GTAGG":6043, "GTTAA":98613, "GTTAT":3054, "GTTAC":17589, "GTTAG":102607, "GTTTA":5549, "GTTTT":16700, "GTTTC":119120, "GTTTG":30339, "GTTCA":9036, "GTTCT":101382, "GTTCC":207710, "GTTCG":99261, "GTTGA":25518, "GTTGT":2961, "GTTGC":105135, "GTTGG":6764, "GTCAA":1515, "GTCAT":1692, "GTCAC":1964, "GTCAG":124599, "GTCTA":9922, "GTCTT":7490, "GTCTC":4527, "GTCTG":1724, "GTCCA":20096, "GTCCT":5400, "GTCCC":8514, "GTCCG":2071, "GTCGA":487, "GTCGT":4589, "GTCGC":9476, "GTCGG":3398, "GTGAA":411, "GTGAT":809, "GTGAC":2759, "GTGAG":626, "GTGTA":401, "GTGTT":123229, "GTGTC":8713, "GTGTG":248, "GTGCA":1044, "GTGCT":8125, "GTGCC":12053, "GTGCG":786, "GTGGA":1074, "GTGGT":2138, "GTGGC":6528, "GTGGG":1295, "GCAAA":1430, "GCAAT":9307, "GCAAC":7917, "GCAAG":4018, "GCATA":3338, "GCATT":124878, "GCATC":4793, "GCATG":1972, "GCACA":4767, "GCACT":117100, "GCACC":17731, "GCACG":101362, "GCAGA":99059, "GCAGT":104373, "GCAGC":4251, "GCAGG":8944, "GCTAA":1093, "GCTAT":2998, "GCTAC":224167, "GCTAG":3843, "GCTTA":10714, "GCTTT":315870, "GCTTC":7164, "GCTTG":105964, "GCTCA":1321, "GCTCT":4386, "GCTCC":46741, "GCTCG":93193, "GCTGA":1356, "GCTGT":2775, "GCTGC":109307, "GCTGG":113956, "GCCAA":5144, "GCCAT":2251, "GCCAC":216780, "GCCAG":4163, "GCCTA":15129, "GCCTT":128486, "GCCTC":129976, "GCCTG":103664, "GCCCA":112833, "GCCCT":13675, "GCCCC":27569, "GCCCG":13685, "GCCGA":93870, "GCCGT":9272, "GCCGC":125674, "GCCGG":3336, "GCGAA":1930, "GCGAT":1004, "GCGAC":2171, "GCGAG":1035, "GCGTA":959, "GCGTT":2303, "GCGTC":109788, "GCGTG":1025, "GCGCA":2052, "GCGCT":90181, "GCGCC":8183, "GCGCG":2714, "GCGGA":2644, "GCGGT":4189, "GCGGC":103424, "GCGGG":7917, "GGAAA":5149, "GGAAT":25789, "GGAAC":1185, "GGAAG":356, "GGATA":21282, "GGATT":6745, "GGATC":350, "GGATG":1073, "GGACA":92487, "GGACT":4679, "GGACC":2040, "GGACG":2960, "GGAGA":999, "GGAGT":99223, "GGAGC":1063, "GGAGG":1043, "GGTAA":928, "GGTAT":126634, "GGTAC":1462, "GGTAG":6067, "GGTTA":94548, "GGTTT":13595, "GGTTC":1705, "GGTTG":27668, "GGTCA":1391, "GGTCT":1430, "GGTCC":1334, "GGTCG":3478, "GGTGA":308, "GGTGT":122867, "GGTGC":8554, "GGTGG":7269, "GGCAA":2104, "GGCAT":1134, "GGCAC":109821, "GGCAG":5967, "GGCTA":2007, "GGCTT":104840, "GGCTC":5168, "GGCTG":108335, "GGCCA":5626, "GGCCT":2527, "GGCCC":10176, "GGCCG":9938, "GGCGA":2733, "GGCGT":1790, "GGCGC":1761, "GGCGG":5387, "GGGAA":6385, "GGGAT":4533, "GGGAC":3880, "GGGAG":1125, "GGGTA":125302, "GGGTT":21582, "GGGTC":670, "GGGTG":5721, "GGGCA":1330, "GGGCT":94397, "GGGCC":2312, "GGGCG":922, "GGGGA":628, "GGGGT":52281, "GGGGC":3499, "GGGGG":36243 }, "overrepresented_sequences": { } }, "command": "fastp -i /data/MicrobiomaFrangos/input/JCMS2_R1.fastq -I /data/MicrobiomaFrangos/input/JCMS2_R2.fastq -o /data/MicrobiomaFrangos/output/fastp/JCMS2_cleaned_R1.fastq -O /data/MicrobiomaFrangos/output/fastp/JCMS2_cleaned_R2.fastq --disable_adapter_trimming --average_qual 10 --cut_right --cut_right_window_size 5 --cut_right_mean_quality 10 --html /data/MicrobiomaFrangos/output/fastp/JCMS2_R1.html --json /data/MicrobiomaFrangos/output/fastp/JCMS2_R1.json " }