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"CGGTT":7990, "CGGTC":1083, "CGGTG":4797, "CGGCA":23585, "CGGCT":322411, "CGGCC":2542, "CGGCG":4045, "CGGGA":47510, "CGGGT":50386, "CGGGC":40248, "CGGGG":58279, "GAAAA":13485, "GAAAT":10526, "GAAAC":32330, "GAAAG":290396, "GAATA":151169, "GAATT":14769, "GAATC":137605, "GAATG":5418, "GAACA":2758, "GAACT":136987, "GAACC":3179, "GAACG":7315, "GAAGA":440730, "GAAGT":20097, "GAAGC":17269, "GAAGG":297669, "GATAA":4009, "GATAT":4223, "GATAC":1663, "GATAG":134671, "GATTA":1890, "GATTT":147821, "GATTC":490, "GATTG":12160, "GATCA":912, "GATCT":2866, "GATCC":436, "GATCG":132067, "GATGA":6305, "GATGT":140488, "GATGC":17670, "GATGG":142992, "GACAA":1722, "GACAT":173, "GACAC":767, "GACAG":4249, "GACTA":6403, "GACTT":1229, "GACTC":546, "GACTG":10872, "GACCA":703, "GACCT":1552, "GACCC":3222, "GACCG":2870, "GACGA":9377, "GACGT":2009, "GACGC":147311, "GACGG":166857, "GAGAA":12677, "GAGAT":366, "GAGAC":1003, "GAGAG":15641, "GAGTA":14886, "GAGTT":814, "GAGTC":2413, "GAGTG":164857, "GAGCA":144267, 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"read2_before_filtering": { "total_reads": 161387, "total_bases": 48418176, "q20_bases": 45387822, "q30_bases": 38458824, "total_cycles": 301, "quality_curves": { 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"read2_after_filtering": { "total_reads": 160867, "total_bases": 47838376, "q20_bases": 45041884, "q30_bases": 38442203, "total_cycles": 301, "quality_curves": { 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"CCCTG":4864, "CCCCA":27354, "CCCCT":17388, "CCCCC":16807, "CCCCG":16493, "CCCGA":11562, "CCCGT":11376, "CCCGC":12362, "CCCGG":39431, "CCGAA":8122, "CCGAT":139776, "CCGAC":6683, "CCGAG":125323, "CCGTA":14095, "CCGTT":6361, "CCGTC":14653, "CCGTG":1550, "CCGCA":4956, "CCGCT":170795, "CCGCC":307623, "CCGCG":134032, "CCGGA":146819, "CCGGT":11723, "CCGGC":15516, "CCGGG":54084, "CGAAA":730, "CGAAT":2808, "CGAAC":1331, "CGAAG":8465, "CGATA":7337, "CGATT":2471, "CGATC":3087, "CGATG":131394, "CGACA":3953, "CGACT":3373, "CGACC":2313, "CGACG":2577, "CGAGA":1496, "CGAGT":1360, "CGAGC":148336, "CGAGG":125796, "CGTAA":3066, "CGTAT":138932, "CGTAC":4842, "CGTAG":125191, "CGTTA":5785, "CGTTT":8044, "CGTTC":4948, "CGTTG":3820, "CGTCA":155240, "CGTCT":13259, "CGTCC":6004, "CGTCG":6052, "CGTGA":2620, "CGTGT":1125, "CGTGC":6370, "CGTGG":2726, "CGCAA":3151, "CGCAT":157794, "CGCAC":10361, "CGCAG":3402, "CGCTA":291792, "CGCTT":281950, "CGCTC":144261, "CGCTG":8308, "CGCCA":160341, "CGCCT":311373, "CGCCC":138650, "CGCCG":10029, "CGCGA":1303, "CGCGT":2587, "CGCGC":7907, "CGCGG":134363, "CGGAA":4804, "CGGAT":19362, "CGGAC":129900, "CGGAG":3783, "CGGTA":2592, "CGGTT":148544, "CGGTC":5787, "CGGTG":2747, "CGGCA":6600, "CGGCT":138643, "CGGCC":7095, "CGGCG":6391, "CGGGA":7956, "CGGGT":60641, "CGGGC":9202, "CGGGG":26949, "GAAAA":129539, "GAAAT":1797, "GAAAC":1745, "GAAAG":3284, "GAATA":1677, "GAATT":24555, "GAATC":787, "GAATG":758, "GAACA":2651, "GAACT":2593, "GAACC":2467, "GAACG":2027, "GAAGA":1947, "GAAGT":3605, "GAAGC":835, "GAAGG":6068, "GATAA":18641, "GATAT":5569, "GATAC":4878, "GATAG":2795, "GATTA":2325, "GATTT":5675, "GATTC":2436, "GATTG":1315, "GATCA":950, "GATCT":2531, "GATCC":2896, "GATCG":1237, "GATGA":409, "GATGT":1800, "GATGC":131162, "GATGG":4310, "GACAA":128454, "GACAT":2409, "GACAC":2839, "GACAG":7233, "GACTA":159556, "GACTT":139388, "GACTC":2464, "GACTG":1757, "GACCA":136173, "GACCT":9849, "GACCC":1960, "GACCG":2277, "GACGA":1540, "GACGT":4225, "GACGC":1878, "GACGG":1945, "GAGAA":1333, "GAGAT":826, "GAGAC":2139, "GAGAG":132851, "GAGTA":912, "GAGTT":139733, "GAGTC":1114, "GAGTG":2216, "GAGCA":4389, "GAGCT":2318, "GAGCC":294290, "GAGCG":1653, "GAGGA":291, "GAGGT":1171, "GAGGC":2855, "GAGGG":125183, "GTAAA":11911, "GTAAT":9215, "GTAAC":1081, "GTAAG":9218, "GTATA":3040, "GTATT":142970, "GTATC":159489, "GTATG":721, "GTACA":1115, "GTACT":6576, "GTACC":1929, "GTACG":1405, "GTAGA":1720, "GTAGT":126942, "GTAGC":3000, "GTAGG":6095, "GTTAA":137338, "GTTAT":3395, "GTTAC":16136, "GTTAG":129763, "GTTTA":6308, "GTTTT":17518, "GTTTC":151160, "GTTTG":27664, "GTTCA":7576, "GTTCT":137359, "GTTCC":283959, "GTTCG":138127, "GTTGA":18421, "GTTGT":3706, "GTTGC":146328, "GTTGG":6157, "GTCAA":1834, "GTCAT":1378, "GTCAC":2118, "GTCAG":157711, "GTCTA":8888, "GTCTT":6600, "GTCTC":2710, "GTCTG":1853, "GTCCA":15061, "GTCCT":5719, "GTCCC":7701, "GTCCG":2055, "GTCGA":523, "GTCGT":5577, "GTCGC":10250, "GTCGG":1776, "GTGAA":283, "GTGAT":649, "GTGAC":3674, "GTGAG":794, "GTGTA":419, "GTGTT":156596, "GTGTC":3977, "GTGTG":264, "GTGCA":1209, "GTGCT":8047, "GTGCC":11048, "GTGCG":808, "GTGGA":1066, "GTGGT":2388, "GTGGC":8225, "GTGGG":1491, "GCAAA":1450, "GCAAT":6194, "GCAAC":6629, "GCAAG":3967, "GCATA":4150, "GCATT":157472, "GCATC":3082, "GCATG":2650, "GCACA":4138, "GCACT":151022, "GCACC":16818, "GCACG":129509, "GCAGA":136233, "GCAGT":142827, "GCAGC":4568, "GCAGG":9868, "GCTAA":1297, "GCTAT":3239, "GCTAC":297628, "GCTAG":3272, "GCTTA":8544, "GCTTT":415997, "GCTTC":9189, "GCTTG":133684, "GCTCA":1526, "GCTCT":5155, "GCTCC":39169, "GCTCG":132583, "GCTGA":1708, "GCTGT":2944, "GCTGC":137848, "GCTGG":144107, "GCCAA":6636, "GCCAT":2230, "GCCAC":285538, "GCCAG":4461, "GCCTA":14498, "GCCTT":162338, "GCCTC":165898, "GCCTG":138896, "GCCCA":142097, "GCCCT":12121, "GCCCC":24617, "GCCCG":14412, "GCCGA":130559, "GCCGT":6588, "GCCGC":162853, "GCCGG":3538, "GCGAA":619, "GCGAT":966, "GCGAC":2324, "GCGAG":1325, "GCGTA":1197, "GCGTT":2749, "GCGTC":147177, "GCGTG":1099, "GCGCA":2547, "GCGCT":128914, "GCGCC":8617, "GCGCG":2971, "GCGGA":2634, "GCGGT":5814, "GCGGC":130344, "GCGGG":10581, "GGAAA":4087, "GGAAT":22240, "GGAAC":1460, "GGAAG":368, "GGATA":16658, "GGATT":4918, "GGATC":344, "GGATG":1316, "GGACA":127851, "GGACT":4744, "GGACC":2160, "GGACG":4022, "GGAGA":1370, "GGAGT":138304, "GGAGC":1407, "GGAGG":1318, "GGTAA":1096, "GGTAT":159639, "GGTAC":1586, "GGTAG":4558, "GGTTA":134574, "GGTTT":14631, "GGTTC":2114, "GGTTG":23467, "GGTCA":1687, "GGTCT":1353, "GGTCC":1397, "GGTCG":4531, "GGTGA":393, "GGTGT":156355, "GGTGC":10910, "GGTGG":9434, "GGCAA":2744, "GGCAT":1516, "GGCAC":137205, "GGCAG":6219, "GGCTA":2549, "GGCTT":140521, "GGCTC":6715, "GGCTG":136763, "GGCCA":6332, "GGCCT":3022, "GGCCC":9927, "GGCCG":10717, "GGCGA":1593, "GGCGT":2038, "GGCGC":2213, "GGCGG":6255, "GGGAA":6633, "GGGAT":2738, "GGGAC":4778, "GGGAG":1351, "GGGTA":158535, "GGGTT":20330, "GGGTC":993, "GGGTG":7356, "GGGCA":1744, "GGGCT":135562, "GGGCC":2794, "GGGCG":1179, "GGGGA":557, "GGGGT":64116, "GGGGC":4290, "GGGGG":58963 }, "overrepresented_sequences": { } }, "command": "fastp -i /data/MicrobiomaFrangos/input/JCMS1_R1.fastq -I /data/MicrobiomaFrangos/input/JCMS1_R2.fastq -o /data/MicrobiomaFrangos/output/fastp/JCMS1_cleaned_R1.fastq -O /data/MicrobiomaFrangos/output/fastp/JCMS1_cleaned_R2.fastq --disable_adapter_trimming --average_qual 10 --cut_right --cut_right_window_size 5 --cut_right_mean_quality 10 --html /data/MicrobiomaFrangos/output/fastp/JCMS1_R1.html --json /data/MicrobiomaFrangos/output/fastp/JCMS1_R1.json " }