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"total_bases": 45551243, "q20_bases": 44848268, "q30_bases": 43098859, "total_cycles": 301, "quality_curves": { 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"CGGTT":155000, "CGGTC":4617, "CGGTG":1823, "CGGCA":2720, "CGGCT":130997, "CGGCC":5675, "CGGCG":7081, "CGGGA":1303, "CGGGT":54050, "CGGGC":5266, "CGGGG":20530, "GAAAA":141430, "GAAAT":1136, "GAAAC":1353, "GAAAG":818, "GAATA":1232, "GAATT":4230, "GAATC":467, "GAATG":115, "GAACA":1718, "GAACT":876, "GAACC":1940, "GAACG":1342, "GAAGA":1231, "GAAGT":2116, "GAAGC":833, "GAAGG":3362, "GATAA":3707, "GATAT":637, "GATAC":670, "GATAG":1435, "GATTA":1107, "GATTT":1837, "GATTC":1561, "GATTG":608, "GATCA":660, "GATCT":1084, "GATCC":2107, "GATCG":728, "GATGA":286, "GATGT":595, "GATGC":141206, "GATGG":4271, "GACAA":133891, "GACAT":2290, "GACAC":2291, "GACAG":3979, "GACTA":149868, "GACTT":141283, "GACTC":1888, "GACTG":986, "GACCA":146154, "GACCT":3517, "GACCC":1292, "GACCG":946, "GACGA":1556, "GACGT":3264, "GACGC":1932, "GACGG":1931, "GAGAA":1364, "GAGAT":657, "GAGAC":2078, "GAGAG":142643, "GAGTA":697, "GAGTT":150778, "GAGTC":1198, "GAGTG":2053, "GAGCA":582, "GAGCT":2103, "GAGCC":291321, "GAGCG":980, "GAGGA":194, "GAGGT":655, "GAGGC":2660, "GAGGG":137266, "GTAAA":2588, "GTAAT":2449, "GTAAC":619, "GTAAG":2034, "GTATA":1947, "GTATT":132877, "GTATC":149684, "GTATG":559, "GTACA":720, "GTACT":4481, "GTACC":1723, "GTACG":1239, "GTAGA":1452, "GTAGT":120286, "GTAGC":2313, "GTAGG":1645, "GTTAA":141836, "GTTAT":2458, "GTTAC":7572, "GTTAG":123322, "GTTTA":4502, "GTTTT":3287, "GTTTC":148240, "GTTTG":7709, "GTTCA":3321, "GTTCT":146554, "GTTCC":287956, "GTTCG":148484, "GTTGA":3447, "GTTGT":2631, "GTTGC":153278, "GTTGG":2014, "GTCAA":1335, "GTCAT":362, "GTCAC":1049, "GTCAG":148406, "GTCTA":981, "GTCTT":5145, "GTCTC":2049, "GTCTG":872, "GTCCA":2078, "GTCCT":3523, "GTCCC":1494, "GTCCG":1386, "GTCGA":367, "GTCGT":4670, "GTCGC":6242, "GTCGG":1824, "GTGAA":177, "GTGAT":312, "GTGAC":133, "GTGAG":728, "GTGTA":375, "GTGTT":147375, "GTGTC":2613, "GTGTG":194, "GTGCA":885, "GTGCT":7046, "GTGCC":2754, "GTGCG":553, "GTGGA":834, "GTGGT":1700, "GTGGC":8228, "GTGGG":1102, "GCAAA":783, "GCAAT":3384, "GCAAC":4318, "GCAAG":2108, "GCATA":991, "GCATT":147334, "GCATC":2369, "GCATG":2394, "GCACA":4070, "GCACT":147475, "GCACC":8839, "GCACG":123200, "GCAGA":146485, "GCAGT":138739, "GCAGC":2972, "GCAGG":4254, "GCTAA":1025, "GCTAT":1521, "GCTAC":292791, "GCTAG":2788, "GCTTA":3133, "GCTTT":429107, "GCTTC":7024, "GCTTG":130681, "GCTCA":1308, "GCTCT":3843, "GCTCC":8443, "GCTCG":137140, "GCTGA":1494, "GCTGT":1513, "GCTGC":129197, "GCTGG":135940, "GCCAA":5423, "GCCAT":1289, "GCCAC":283170, "GCCAG":3203, "GCCTA":2483, "GCCTT":150590, "GCCTC":152048, "GCCTG":141322, "GCCCA":138232, "GCCCT":6039, "GCCCC":10871, "GCCCG":8201, "GCCGA":139261, "GCCGT":3382, "GCCGC":154374, "GCCGG":2968, "GCGAA":453, "GCGAT":593, "GCGAC":1756, "GCGAG":1355, "GCGTA":1261, "GCGTT":2824, "GCGTC":147093, "GCGTG":982, "GCGCA":2109, "GCGCT":134847, "GCGCC":5118, "GCGCG":2280, "GCGGA":2540, "GCGGT":4937, "GCGGC":123366, "GCGGG":9707, "GGAAA":4052, "GGAAT":1530, "GGAAC":1241, "GGAAG":292, "GGATA":3216, "GGATT":2300, "GGATC":238, "GGATG":928, "GGACA":132811, "GGACT":3975, "GGACC":1864, "GGACG":3362, "GGAGA":1333, "GGAGT":149648, "GGAGC":1618, "GGAGG":1032, "GGTAA":923, "GGTAT":149552, "GGTAC":1158, "GGTAG":3707, "GGTTA":142582, "GGTTT":8852, "GGTTC":2255, "GGTTG":10029, "GGTCA":1212, "GGTCT":701, "GGTCC":541, "GGTCG":4249, "GGTGA":329, "GGTGT":147229, "GGTGC":6438, "GGTGG":9205, "GGCAA":2726, "GGCAT":1348, "GGCAC":127958, "GGCAG":4090, "GGCTA":1751, "GGCTT":145725, "GGCTC":6557, "GGCTG":129679, "GGCCA":4366, "GGCCT":2917, "GGCCC":7154, "GGCCG":2694, "GGCGA":1534, "GGCGT":2264, "GGCGC":2374, "GGCGG":6468, "GGGAA":401, "GGGAT":1121, "GGGAC":3616, "GGGAG":1220, "GGGTA":148904, "GGGTT":5642, "GGGTC":858, "GGGTG":6534, "GGGCA":1553, "GGGCT":144667, "GGGCC":2527, "GGGCG":1024, "GGGGA":305, "GGGGT":54854, "GGGGC":4243, "GGGGG":47118 }, "overrepresented_sequences": { } }, "command": "fastp -i /data/MicrobiomaFrangos/input/JCFS2_R1.fastq -I /data/MicrobiomaFrangos/input/JCFS2_R2.fastq -o /data/MicrobiomaFrangos/output/fastp/JCFS2_cleaned_R1.fastq -O /data/MicrobiomaFrangos/output/fastp/JCFS2_cleaned_R2.fastq --disable_adapter_trimming --average_qual 10 --cut_right --cut_right_window_size 5 --cut_right_mean_quality 10 --html /data/MicrobiomaFrangos/output/fastp/JCFS2_R1.html --json /data/MicrobiomaFrangos/output/fastp/JCFS2_R1.json " }