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"read2_before_filtering": { "total_reads": 228943, "total_bases": 68810776, "q20_bases": 64105139, "q30_bases": 53179566, "total_cycles": 301, "quality_curves": { 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"CGCCT":291961, "CGCCC":211055, "CGCCG":15207, "CGCGA":1609, "CGCGT":3343, "CGCGC":101049, "CGCGG":183215, "CGGAA":4285, "CGGAT":202234, "CGGAC":8921, "CGGAG":4745, "CGGTA":12434, "CGGTT":217639, "CGGTC":5131, "CGGTG":3057, "CGGCA":4389, "CGGCT":187846, "CGGCC":5852, "CGGCG":10181, "CGGGA":2702, "CGGGT":88301, "CGGGC":4487, "CGGGG":30729, "GAAAA":7402, "GAAAT":3043, "GAAAC":138369, "GAAAG":1453, "GAATA":2321, "GAATT":220636, "GAATC":1256, "GAATG":521, "GAACA":2563, "GAACT":2381, "GAACC":4712, "GAACG":2316, "GAAGA":508, "GAAGT":3574, "GAAGC":49966, "GAAGG":1672, "GATAA":196723, "GATAT":2578, "GATAC":2396, "GATAG":3881, "GATTA":8935, "GATTT":3642, "GATTC":2730, "GATTG":978, "GATCA":781, "GATCT":1231, "GATCC":1213, "GATCG":608, "GATGA":1332, "GATGT":1058, "GATGC":4644, "GATGG":1625, "GACAA":5509, "GACAT":1785, "GACAC":1539, "GACAG":1925, "GACTA":224427, "GACTT":210025, "GACTC":2671, "GACTG":1333, "GACCA":101151, "GACCT":3628, "GACCC":52102, "GACCG":2391, "GACGA":1212, "GACGT":7167, "GACGC":1883, "GACGG":800, "GAGAA":913, "GAGAT":411, "GAGAC":2498, "GAGAG":162899, "GAGTA":2065, "GAGTT":11124, "GAGTC":1460, "GAGTG":2866, "GAGCA":1139, "GAGCT":1649, "GAGCC":328476, "GAGCG":1873, "GAGGA":629, "GAGGT":1208, "GAGGC":5720, "GAGGG":4260, "GTAAA":4986, "GTAAT":150184, "GTAAC":4972, "GTAAG":6696, "GTATA":3472, "GTATT":199093, "GTATC":226311, "GTATG":1314, "GTACA":1417, "GTACT":12829, "GTACC":3031, "GTACG":3039, "GTAGA":2885, "GTAGT":178521, "GTAGC":165165, "GTAGG":6459, "GTTAA":60378, "GTTAT":7683, "GTTAC":226047, "GTTAG":179622, "GTTTA":6372, "GTTTT":9112, "GTTTC":375176, "GTTTG":229768, "GTTCA":3216, "GTTCT":7605, "GTTCC":230101, "GTTCG":7149, "GTTGA":209535, "GTTGT":4318, "GTTGC":13846, "GTTGG":2940, "GTCAA":1160, "GTCAT":1100, "GTCAC":1845, "GTCAG":223463, "GTCTA":2913, "GTCTT":9328, "GTCTC":3375, "GTCTG":3146, "GTCCA":168256, "GTCCT":2324, "GTCCC":5057, "GTCCG":1877, "GTCGA":1250, "GTCGT":7797, "GTCGC":5836, "GTCGG":1686, "GTGAA":156, "GTGAT":753, "GTGAC":2233, "GTGAG":1538, "GTGTA":760, "GTGTT":222789, "GTGTC":213158, "GTGTG":596, "GTGCA":797, "GTGCT":15975, "GTGCC":167992, "GTGCG":1120, "GTGGA":818, "GTGGT":3796, "GTGGC":15405, "GTGGG":49531, "GCAAA":982, "GCAAT":4190, "GCAAC":164329, "GCAAG":3898, "GCATA":3962, "GCATT":221928, "GCATC":4080, "GCATG":1053, "GCACA":2586, "GCACT":213447, "GCACC":160478, "GCACG":175594, "GCAGA":4126, "GCAGT":10661, "GCAGC":5101, "GCAGG":8407, "GCTAA":3142, "GCTAT":2483, "GCTAC":231656, "GCTAG":138310, "GCTTA":160854, "GCTTT":285903, "GCTTC":6617, "GCTTG":14733, "GCTCA":2698, "GCTCT":49151, "GCTCC":231902, "GCTCG":51351, "GCTGA":2199, "GCTGT":2687, "GCTGC":179555, "GCTGG":197526, "GCCAA":2805, "GCCAT":2316, "GCCAC":114265, "GCCAG":6100, "GCCTA":11802, "GCCTT":385118, "GCCTC":227635, "GCCTG":9121, "GCCCA":194741, "GCCCT":10578, "GCCCC":173031, "GCCCG":20583, "GCCGA":6692, "GCCGT":205417, "GCCGC":230573, "GCCGG":7990, "GCGAA":250, "GCGAT":433, "GCGAC":1717, "GCGAG":628, "GCGTA":4704, "GCGTT":2936, "GCGTC":10109, "GCGTG":2137, "GCGCA":3497, "GCGCT":49037, "GCGCC":61099, "GCGCG":46902, "GCGGA":2862, "GCGGT":3990, "GCGGC":177500, "GCGGG":17545, "GGAAA":3446, "GGAAT":216636, "GGAAC":3714, "GGAAG":49051, "GGATA":194591, "GGATT":10898, "GGATC":704, "GGATG":1964, "GGACA":5248, "GGACT":3720, "GGACC":3791, "GGACG":6266, "GGAGA":1068, "GGAGT":7955, "GGAGC":1617, "GGAGG":1718, "GGTAA":2123, "GGTAT":227284, "GGTAC":2063, "GGTAG":16327, "GGTTA":59263, "GGTTT":6952, "GGTTC":1737, "GGTTG":166063, "GGTCA":367, "GGTCT":2293, "GGTCC":1618, "GGTCG":3744, "GGTGA":769, "GGTGT":222778, "GGTGC":13846, "GGTGG":17456, "GGCAA":2248, "GGCAT":2165, "GGCAC":175016, "GGCAG":7957, "GGCTA":4743, "GGCTT":215483, "GGCTC":9168, "GGCTG":182955, "GGCCA":5608, "GGCCT":2250, "GGCCC":23358, "GGCCG":6692, "GGCGA":315, "GGCGT":5233, "GGCGC":3077, "GGCGG":10482, "GGGAA":1581, "GGGAT":3054, "GGGAC":5873, "GGGAG":2042, "GGGTA":225139, "GGGTT":8370, "GGGTC":922, "GGGTG":15637, "GGGCA":866, "GGGCT":57455, "GGGCC":3560, "GGGCG":1870, "GGGGA":708, "GGGGT":80702, "GGGGC":4749, "GGGGG":69719 }, "overrepresented_sequences": { } }, "command": "fastp -i /data/MicrobiomaFrangos/input/IVFS1_R1.fastq -I /data/MicrobiomaFrangos/input/IVFS1_R2.fastq -o /data/MicrobiomaFrangos/output/fastp/IVFS1_cleaned_R1.fastq -O /data/MicrobiomaFrangos/output/fastp/IVFS1_cleaned_R2.fastq --disable_adapter_trimming --average_qual 10 --cut_right --cut_right_window_size 5 --cut_right_mean_quality 10 --html /data/MicrobiomaFrangos/output/fastp/IVFS1_R1.html --json /data/MicrobiomaFrangos/output/fastp/IVFS1_R1.json " }