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"CGCGG":101032, "CGGAA":2510, "CGGAT":73245, "CGGAC":7146, "CGGAG":27768, "CGGTA":38730, "CGGTT":82211, "CGGTC":1572, "CGGTG":2190, "CGGCA":2981, "CGGCT":105067, "CGGCC":4585, "CGGCG":7245, "CGGGA":2722, "CGGGT":49074, "CGGGC":2361, "CGGGG":50498, "GAAAA":5124, "GAAAT":2499, "GAAAC":61165, "GAAAG":1225, "GAATA":1693, "GAATT":118021, "GAATC":962, "GAATG":529, "GAACA":9250, "GAACT":1672, "GAACC":3229, "GAACG":1699, "GAAGA":430, "GAAGT":2164, "GAAGC":1190, "GAAGG":1662, "GATAA":68685, "GATAT":2257, "GATAC":1926, "GATAG":2296, "GATTA":33702, "GATTT":34847, "GATTC":2142, "GATTG":1133, "GATCA":621, "GATCT":32216, "GATCC":1620, "GATCG":380, "GATGA":753, "GATGT":826, "GATGC":34580, "GATGG":1557, "GACAA":4855, "GACAT":1101, "GACAC":1256, "GACAG":1548, "GACTA":123643, "GACTT":108562, "GACTC":33186, "GACTG":1057, "GACCA":5161, "GACCT":2376, "GACCC":4011, "GACCG":1440, "GACGA":256, "GACGT":3285, "GACGC":1356, "GACGG":1265, "GAGAA":550, "GAGAT":827, "GAGAC":31912, "GAGAG":74717, "GAGTA":2185, 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"read1_after_filtering": { "total_reads": 125217, "total_bases": 37604507, "q20_bases": 37046722, "q30_bases": 35686564, "total_cycles": 301, "quality_curves": { 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"CGGAA":2270, "CGGAT":72179, "CGGAC":6912, "CGGAG":27241, "CGGTA":38278, "CGGTT":81164, "CGGTC":1429, "CGGTG":1945, "CGGCA":2743, "CGGCT":103170, "CGGCC":4197, "CGGCG":6691, "CGGGA":2529, "CGGGT":48332, "CGGGC":2080, "CGGGG":49451, "GAAAA":4681, "GAAAT":2123, "GAAAC":60709, "GAAAG":1156, "GAATA":1412, "GAATT":117074, "GAATC":876, "GAATG":489, "GAACA":9035, "GAACT":1521, "GAACC":2969, "GAACG":1540, "GAAGA":374, "GAAGT":1956, "GAAGC":1074, "GAAGG":1579, "GATAA":67850, "GATAT":2107, "GATAC":1767, "GATAG":2161, "GATTA":33073, "GATTT":34231, "GATTC":2006, "GATTG":1037, "GATCA":544, "GATCT":32089, "GATCC":1478, "GATCG":294, "GATGA":680, "GATGT":732, "GATGC":34299, "GATGG":1396, "GACAA":4695, "GACAT":948, "GACAC":1108, "GACAG":1476, "GACTA":123384, "GACTT":107715, "GACTC":32973, "GACTG":1004, "GACCA":5041, "GACCT":2202, "GACCC":3631, "GACCG":1288, "GACGA":194, "GACGT":2973, "GACGC":1199, "GACGG":1137, "GAGAA":501, "GAGAT":758, "GAGAC":31731, "GAGAG":74567, "GAGTA":2050, "GAGTT":33970, "GAGTC":1430, "GAGTG":1589, "GAGCA":1116, "GAGCT":1148, "GAGCC":182774, "GAGCG":32928, "GAGGA":215, "GAGGT":896, "GAGGC":3437, "GAGGG":3082, "GTAAA":3489, "GTAAT":94981, "GTAAC":3064, "GTAAG":12847, "GTATA":2214, "GTATT":140912, "GTATC":155782, "GTATG":877, "GTACA":954, "GTACT":6258, "GTACC":2026, "GTACG":1602, "GTAGA":1402, "GTAGT":72816, "GTAGC":72580, "GTAGG":4079, "GTTAA":25052, "GTTAT":12507, "GTTAC":89595, "GTTAG":97548, "GTTTA":4234, "GTTTT":16185, "GTTTC":149403, "GTTTG":125090, "GTTCA":2945, "GTTCT":15317, "GTTCC":116006, "GTTCG":5597, "GTTGA":104799, "GTTGT":2032, "GTTGC":10934, "GTTGG":2199, "GTCAA":746, "GTCAT":996, "GTCAC":1255, "GTCAG":122291, "GTCTA":2457, "GTCTT":36189, "GTCTC":2960, "GTCTG":1784, "GTCCA":116212, "GTCCT":1855, "GTCCC":3363, "GTCCG":1701, "GTCGA":697, "GTCGT":3143, "GTCGC":11140, "GTCGG":1012, "GTGAA":144, "GTGAT":525, "GTGAC":1610, "GTGAG":962, "GTGTA":442, "GTGTT":90777, "GTGTC":73486, "GTGTG":419, "GTGCA":640, "GTGCT":16544, "GTGCC":76039, "GTGCG":29518, "GTGGA":566, "GTGGT":2212, "GTGGC":8243, "GTGGG":2407, "GCAAA":693, "GCAAT":2790, "GCAAC":73678, "GCAAG":2594, "GCATA":2364, "GCATT":121343, "GCATC":10309, "GCATG":1169, "GCACA":2203, "GCACT":86524, "GCACC":132452, "GCACG":98850, "GCAGA":4033, "GCAGT":39351, "GCAGC":3230, "GCAGG":5178, "GCTAA":1516, "GCTAT":1675, "GCTAC":128568, "GCTAG":60436, "GCTTA":72610, "GCTTT":163238, "GCTTC":4692, "GCTTG":76568, "GCTCA":1310, "GCTCT":12114, "GCTCC":125542, "GCTCG":7268, "GCTGA":1374, "GCTGT":1400, "GCTGC":99196, "GCTGG":107792, "GCCAA":1287, "GCCAT":1402, "GCCAC":65158, "GCCAG":35619, "GCCTA":23874, "GCCTT":194454, "GCCTC":93731, "GCCTG":38315, "GCCCA":104745, "GCCCT":6040, "GCCCC":81181, "GCCCG":39403, "GCCGA":5078, "GCCGT":70913, "GCCGC":117470, "GCCGG":5145, "GCGAA":419, "GCGAT":649, "GCGAC":1170, "GCGAG":752, "GCGTA":2678, "GCGTT":2704, "GCGTC":48571, "GCGTG":30706, "GCGCA":1832, "GCGCT":33192, "GCGCC":7231, "GCGCG":2304, "GCGGA":1501, "GCGGT":2155, "GCGGC":97553, "GCGGG":8436, "GGAAA":1698, "GGAAT":114859, "GGAAC":2083, "GGAAG":543, "GGATA":66920, "GGATT":37177, "GGATC":994, "GGATG":1342, "GGACA":4526, "GGACT":4501, "GGACC":2382, "GGACG":3079, "GGAGA":885, "GGAGT":31806, "GGAGC":850, "GGAGG":1014, "GGTAA":1240, "GGTAT":156811, "GGTAC":1348, "GGTAG":8014, "GGTTA":15877, "GGTTT":5435, "GGTTC":1295, "GGTTG":108203, "GGTCA":417, "GGTCT":939, "GGTCC":1111, "GGTCG":1183, "GGTGA":472, "GGTGT":90614, "GGTGC":7871, "GGTGG":9263, "GGCAA":1600, "GGCAT":1475, "GGCAC":99322, "GGCAG":4632, "GGCTA":2702, "GGCTT":78922, "GGCTC":3828, "GGCTG":101109, "GGCCA":2957, "GGCCT":1438, "GGCCC":10258, "GGCCG":35995, "GGCGA":443, "GGCGT":3137, "GGCGC":1535, "GGCGG":6214, "GGGAA":1594, "GGGAT":32526, "GGGAC":3328, "GGGAG":1691, "GGGTA":123365, "GGGTT":6608, "GGGTC":607, "GGGTG":8465, "GGGCA":658, "GGGCT":7303, "GGGCC":33467, "GGGCG":1308, "GGGGA":31234, "GGGGT":44931, "GGGGC":35110, "GGGGG":74017 }, "overrepresented_sequences": { } }, "command": "fastp -i /data/MicrobiomaFrangos/input/ICMS2_R1.fastq -I /data/MicrobiomaFrangos/input/ICMS2_R2.fastq -o /data/MicrobiomaFrangos/output/fastp/ICMS2_cleaned_R1.fastq -O /data/MicrobiomaFrangos/output/fastp/ICMS2_cleaned_R2.fastq --disable_adapter_trimming --average_qual 10 --cut_right --cut_right_window_size 5 --cut_right_mean_quality 10 --html /data/MicrobiomaFrangos/output/fastp/ICMS2_R1.html --json /data/MicrobiomaFrangos/output/fastp/ICMS2_R1.json " }