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"overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 194877, "total_bases": 58504963, "q20_bases": 54659710, "q30_bases": 45801538, "total_cycles": 301, "quality_curves": { 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"CGCTG":8386, "CGCCA":142015, "CGCCT":328969, "CGCCC":180826, "CGCCG":11851, "CGCGA":1157, "CGCGT":3475, "CGCGC":7576, "CGCGG":161368, "CGGAA":3020, "CGGAT":57279, "CGGAC":46869, "CGGAG":68586, "CGGTA":86493, "CGGTT":111478, "CGGTC":3119, "CGGTG":3271, "CGGCA":4231, "CGGCT":166326, "CGGCC":7329, "CGGCG":10528, "CGGGA":3669, "CGGGT":73879, "CGGGC":4475, "CGGGG":108683, "GAAAA":45204, "GAAAT":2863, "GAAAC":45519, "GAAAG":1122, "GAATA":2718, "GAATT":145027, "GAATC":1467, "GAATG":674, "GAACA":7038, "GAACT":1870, "GAACC":4908, "GAACG":2110, "GAAGA":704, "GAAGT":2420, "GAAGC":1569, "GAAGG":3294, "GATAA":52328, "GATAT":2397, "GATAC":1901, "GATAG":2584, "GATTA":77869, "GATTT":82963, "GATTC":2929, "GATTG":1704, "GATCA":972, "GATCT":79632, "GATCC":2670, "GATCG":628, "GATGA":855, "GATGT":1059, "GATGC":121843, "GATGG":3762, "GACAA":44022, "GACAT":2001, "GACAC":2276, "GACAG":2609, "GACTA":191812, "GACTT":178725, "GACTC":80611, "GACTG":1590, "GACCA":47440, "GACCT":3304, "GACCC":4822, "GACCG":2405, 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"GGGCC":83168, "GGGCG":2678, "GGGGA":78945, "GGGGT":71557, "GGGGC":86362, "GGGGG":135638 }, "overrepresented_sequences": { } }, "read1_after_filtering": { "total_reads": 194122, "total_bases": 58289812, "q20_bases": 57392154, "q30_bases": 55200752, "total_cycles": 301, "quality_curves": { 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"read2_after_filtering": { "total_reads": 194122, "total_bases": 57765973, "q20_bases": 54213445, "q30_bases": 45779962, "total_cycles": 301, "quality_curves": { 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"CGCCT":326987, "CGCCC":178764, "CGCCG":11004, "CGCGA":1023, "CGCGT":3035, "CGCGC":7062, "CGCGG":158806, "CGGAA":2701, "CGGAT":56270, "CGGAC":46204, "CGGAG":67540, "CGGTA":85814, "CGGTT":109951, "CGGTC":2887, "CGGTG":2900, "CGGCA":3873, "CGGCT":163725, "CGGCC":6653, "CGGCG":9590, "CGGGA":3359, "CGGGT":72706, "CGGGC":3951, "CGGGG":106979, "GAAAA":44469, "GAAAT":2336, "GAAAC":45128, "GAAAG":1043, "GAATA":2262, "GAATT":143708, "GAATC":1309, "GAATG":616, "GAACA":6772, "GAACT":1700, "GAACC":4564, "GAACG":1909, "GAAGA":623, "GAAGT":2157, "GAAGC":1401, "GAAGG":3147, "GATAA":51576, "GATAT":2200, "GATAC":1712, "GATAG":2395, "GATTA":76893, "GATTT":81854, "GATTC":2682, "GATTG":1541, "GATCA":848, "GATCT":79364, "GATCC":2435, "GATCG":537, "GATGA":756, "GATGT":926, "GATGC":121150, "GATGG":3462, "GACAA":43433, "GACAT":1755, "GACAC":2032, "GACAG":2492, "GACTA":191421, "GACTT":177281, "GACTC":80186, "GACTG":1473, "GACCA":47169, "GACCT":3079, "GACCC":4324, "GACCG":2165, "GACGA":567, "GACGT":3240, "GACGC":1788, "GACGG":2247, "GAGAA":814, "GAGAT":1421, "GAGAC":78649, "GAGAG":96634, "GAGTA":3222, "GAGTT":118997, "GAGTC":2347, "GAGTG":1967, "GAGCA":1252, "GAGCT":1863, "GAGCC":276969, "GAGCG":81675, "GAGGA":268, "GAGGT":1538, "GAGGC":4572, "GAGGG":42381, "GTAAA":4362, "GTAAT":123198, "GTAAC":3241, "GTAAG":10349, "GTATA":2983, "GTATT":250430, "GTATC":272122, "GTATG":1212, "GTACA":1079, "GTACT":6281, "GTACC":2665, "GTACG":1623, "GTAGA":1541, "GTAGT":89615, "GTAGC":53969, "GTAGG":3614, "GTTAA":58637, "GTTAT":10824, "GTTAC":68573, "GTTAG":154614, "GTTTA":5933, "GTTTT":14859, "GTTTC":154267, "GTTTG":154366, "GTTCA":4832, "GTTCT":55237, "GTTCC":225243, "GTTCG":48546, "GTTGA":134434, "GTTGT":2273, "GTTGC":56953, "GTTGG":2880, "GTCAA":963, "GTCAT":1363, "GTCAC":1641, "GTCAG":190104, "GTCTA":2927, "GTCTT":85165, "GTCTC":3751, "GTCTG":2222, "GTCCA":141580, "GTCCT":2487, "GTCCC":4109, "GTCCG":2563, "GTCGA":801, "GTCGT":3626, "GTCGC":9541, "GTCGG":1310, "GTGAA":137, "GTGAT":669, "GTGAC":1740, "GTGAG":1361, "GTGTA":430, "GTGTT":110865, "GTGTC":54061, "GTGTG":524, "GTGCA":996, "GTGCT":15815, "GTGCC":56889, "GTGCG":74167, "GTGGA":839, "GTGGT":2506, "GTGGC":10896, "GTGGG":4710, "GCAAA":881, "GCAAT":4473, "GCAAC":55351, "GCAAG":3375, "GCATA":2132, "GCATT":189049, "GCATC":8526, "GCATG":2471, "GCACA":2947, "GCACT":108854, "GCACC":210268, "GCACG":156371, "GCAGA":46526, "GCAGT":125765, "GCAGC":4612, "GCAGG":6737, "GCTAA":1455, "GCTAT":2123, "GCTAC":237368, "GCTAG":45779, "GCTTA":56129, "GCTTT":356633, "GCTTC":7231, "GCTTG":201330, "GCTCA":1590, "GCTCT":9928, "GCTCC":153315, "GCTCG":46063, "GCTGA":2080, "GCTGT":1962, "GCTGC":160060, "GCTGG":171370, "GCCAA":2843, "GCCAT":1696, "GCCAC":188549, "GCCAG":84758, "GCCTA":17901, "GCCTT":245718, "GCCTC":115376, "GCCTG":126072, "GCCCA":167172, "GCCCT":7038, "GCCCC":69191, "GCCCG":89031, "GCCGA":45392, "GCCGT":53501, "GCCGC":190933, "GCCGG":7257, "GCGAA":389, "GCGAT":1332, "GCGAC":1696, "GCGAG":1593, "GCGTA":2835, "GCGTT":4614, "GCGTC":136132, "GCGTG":76489, "GCGCA":2839, "GCGCT":115321, "GCGCC":8978, "GCGCG":3361, "GCGGA":2432, "GCGGT":4592, "GCGGC":155189, "GCGGG":11807, "GGAAA":2423, "GGAAT":140690, "GGAAC":2459, "GGAAG":581, "GGATA":50385, "GGATT":84126, "GGATC":1192, "GGATG":1804, "GGACA":42924, "GGACT":6561, "GGACC":3234, "GGACG":4346, "GGAGA":1479, "GGAGT":116054, "GGAGC":1385, "GGAGG":1730, "GGTAA":1522, "GGTAT":272941, "GGTAC":1898, "GGTAG":7057, "GGTTA":52465, "GGTTT":9543, "GGTTC":2015, "GGTTG":141418, "GGTCA":828, "GGTCT":1505, "GGTCC":1213, "GGTCG":2351, "GGTGA":701, "GGTGT":110576, "GGTGC":10909, "GGTGG":12569, "GGCAA":2565, "GGCAT":1901, "GGCAC":158957, "GGCAG":6394, "GGCTA":2633, "GGCTT":104232, "GGCTC":6026, "GGCTG":162185, "GGCCA":4656, "GGCCT":2511, "GGCCC":12920, "GGCCG":85584, "GGCGA":878, "GGCGT":4527, "GGCGC":2431, "GGCGG":7824, "GGGAA":1769, "GGGAT":79523, "GGGAC":5113, "GGGAG":3051, "GGGTA":191374, "GGGTT":8957, "GGGTC":1032, "GGGTG":11796, "GGGCA":1205, "GGGCT":51006, "GGGCC":82583, "GGGCG":2130, "GGGGA":78379, "GGGGT":70670, "GGGGC":85407, "GGGGG":132959 }, "overrepresented_sequences": { } }, "command": "fastp -i /data/MicrobiomaFrangos/input/ICMS1_R1.fastq -I /data/MicrobiomaFrangos/input/ICMS1_R2.fastq -o /data/MicrobiomaFrangos/output/fastp/ICMS1_cleaned_R1.fastq -O /data/MicrobiomaFrangos/output/fastp/ICMS1_cleaned_R2.fastq --disable_adapter_trimming --average_qual 10 --cut_right --cut_right_window_size 5 --cut_right_mean_quality 10 --html /data/MicrobiomaFrangos/output/fastp/ICMS1_R1.html --json /data/MicrobiomaFrangos/output/fastp/ICMS1_R1.json " }