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"GGGGT":1709, "GGGGC":76196, "GGGGG":144613 }, "overrepresented_sequences": { } }, "read2_after_filtering": { "total_reads": 139294, "total_bases": 41413172, "q20_bases": 38902199, "q30_bases": 32941207, "total_cycles": 301, "quality_curves": { 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"CCCAG":90146, "CCCTA":38637, "CCCTT":50649, "CCCTC":34688, "CCCTG":7808, "CCCCA":65058, "CCCCT":50128, "CCCCC":58772, "CCCCG":19017, "CCCGA":12509, "CCCGT":14576, "CCCGC":14382, "CCCGG":49264, "CCGAA":24863, "CCGAT":88655, "CCGAC":6260, "CCGAG":57801, "CCGTA":43377, "CCGTT":9649, "CCGTC":15884, "CCGTG":2264, "CCGCA":5433, "CCGCT":148668, "CCGCC":240240, "CCGCG":113687, "CCGGA":112258, "CCGGT":31610, "CCGGC":15900, "CCGGG":59378, "CGAAA":1603, "CGAAT":2974, "CGAAC":11154, "CGAAG":16842, "CGATA":6878, "CGATT":14255, "CGATC":6354, "CGATG":65166, "CGACA":3003, "CGACT":3852, "CGACC":3175, "CGACG":1832, "CGAGA":12712, "CGAGT":2431, "CGAGC":84924, "CGAGG":56619, "CGTAA":4687, "CGTAT":117918, "CGTAC":7888, "CGTAG":110147, "CGTTA":5606, "CGTTT":7104, "CGTTC":4020, "CGTTG":6765, "CGTCA":115820, "CGTCT":16411, "CGTCC":18840, "CGTCG":5232, "CGTGA":1234, "CGTGT":1077, "CGTGC":32092, "CGTGG":3636, "CGCAA":17851, "CGCAT":142483, "CGCAC":35717, "CGCAG":4586, "CGCTA":215572, "CGCTT":235952, "CGCTC":83293, "CGCTG":6525, "CGCCA":120792, "CGCCT":255468, "CGCCC":120720, "CGCCG":14703, "CGCGA":1637, "CGCGT":2263, "CGCGC":11655, "CGCGG":113939, "CGGAA":9530, "CGGAT":42227, "CGGAC":70866, "CGGAG":13160, "CGGTA":15651, "CGGTT":101050, "CGGTC":3508, "CGGTG":2727, "CGGCA":8275, "CGGCT":119045, "CGGCC":10273, "CGGCG":9587, "CGGGA":7048, "CGGGT":52990, "CGGGC":8414, "CGGGG":36005, "GAAAA":59825, "GAAAT":5620, "GAAAC":14208, "GAAAG":5539, "GAATA":1784, "GAATT":62566, "GAATC":923, "GAATG":825, "GAACA":11031, "GAACT":5030, "GAACC":8959, "GAACG":1997, "GAAGA":2350, "GAAGT":2826, "GAAGC":929, "GAAGG":15857, "GATAA":38950, "GATAT":4740, "GATAC":3146, "GATAG":3056, "GATTA":13470, "GATTT":22879, "GATTC":2818, "GATTG":1844, "GATCA":717, "GATCT":18125, "GATCC":2573, "GATCG":1963, "GATGA":468, "GATGT":3440, "GATGC":81166, "GATGG":3127, "GACAA":68233, "GACAT":1627, "GACAC":2455, "GACAG":9310, "GACTA":137840, "GACTT":105722, "GACTC":13342, "GACTG":1864, "GACCA":74934, "GACCT":9616, "GACCC":4411, "GACCG":2431, "GACGA":935, "GACGT":3068, "GACGC":4986, "GACGG":4840, "GAGAA":1031, "GAGAT":777, "GAGAC":12692, "GAGAG":81636, "GAGTA":1317, "GAGTT":89216, "GAGTC":1291, "GAGTG":5123, "GAGCA":4951, "GAGCT":2838, "GAGCC":213470, "GAGCG":12943, "GAGGA":251, "GAGGT":1185, "GAGGC":2939, "GAGGG":55870, "GTAAA":13953, "GTAAT":32454, "GTAAC":1909, "GTAAG":18243, "GTATA":4904, "GTATT":130139, "GTATC":149664, "GTATG":775, "GTACA":1382, "GTACT":9855, "GTACC":2039, "GTACG":1334, "GTAGA":2023, "GTAGT":99915, "GTAGC":17148, "GTAGG":6887, "GTTAA":91984, "GTTAT":11644, "GTTAC":40333, "GTTAG":113189, "GTTTA":5894, "GTTTT":27245, "GTTTC":122903, "GTTTG":66326, "GTTCA":11344, "GTTCT":89196, "GTTCC":178256, "GTTCG":76752, "GTTGA":53580, "GTTGT":3439, "GTTGC":82658, "GTTGG":7025, "GTCAA":1300, "GTCAT":1527, "GTCAC":1889, "GTCAG":136341, "GTCTA":8601, "GTCTT":20118, "GTCTC":6729, "GTCTG":2290, "GTCCA":55756, "GTCCT":8059, "GTCCC":8952, "GTCCG":1733, "GTCGA":581, "GTCGT":4936, "GTCGC":19067, "GTCGG":5236, "GTGAA":730, "GTGAT":763, "GTGAC":1795, "GTGAG":789, "GTGTA":491, "GTGTT":123655, "GTGTC":24639, "GTGTG":324, "GTGCA":1082, "GTGCT":19064, "GTGCC":25370, "GTGCG":11316, "GTGGA":944, "GTGGT":3187, "GTGGC":8072, "GTGGG":3010, "GCAAA":1529, "GCAAT":13286, "GCAAC":23900, "GCAAG":3442, "GCATA":2780, "GCATT":135806, "GCATC":15730, "GCATG":2322, "GCACA":6086, "GCACT":115750, "GCACC":52494, "GCACG":108396, "GCAGA":77067, "GCAGT":89785, "GCAGC":4435, "GCAGG":11064, "GCTAA":1257, "GCTAT":4983, "GCTAC":209593, "GCTAG":15647, "GCTTA":23671, "GCTTT":296243, "GCTTC":7031, "GCTTG":118071, "GCTCA":1527, "GCTCT":13925, "GCTCC":83284, "GCTCG":66690, "GCTGA":1519, "GCTGT":2810, "GCTGC":118665, "GCTGG":123247, "GCCAA":4257, "GCCAT":2306, "GCCAC":203137, "GCCAG":16266, "GCCTA":33184, "GCCTT":151324, "GCCTC":130672, "GCCTG":95531, "GCCCA":122164, "GCCCT":20445, "GCCCC":41709, "GCCCG":29971, "GCCGA":72047, "GCCGT":24765, "GCCGC":126815, "GCCGG":4786, "GCGAA":2530, "GCGAT":1157, "GCGAC":2618, "GCGAG":895, "GCGTA":1497, "GCGTT":3217, "GCGTC":108346, "GCGTG":11771, "GCGCA":2412, "GCGCT":74110, "GCGCC":12611, "GCGCG":4322, "GCGGA":3694, "GCGGT":3867, "GCGGC":111974, "GCGGG":8425, "GGAAA":6420, "GGAAT":59737, "GGAAC":1694, "GGAAG":443, "GGATA":37269, "GGATT":21791, "GGATC":816, "GGATG":1391, "GGACA":67700, "GGACT":5410, "GGACC":2489, "GGACG":3132, "GGAGA":1073, "GGAGT":84873, "GGAGC":1105, "GGAGG":1149, "GGTAA":1122, "GGTAT":150150, "GGTAC":1517, "GGTAG":8543, "GGTTA":77704, "GGTTT":16669, "GGTTC":1751, "GGTTG":54895, "GGTCA":973, "GGTCT":1125, "GGTCC":1270, "GGTCG":2673, "GGTGA":417, "GGTGT":123264, "GGTGC":8108, "GGTGG":9053, "GGCAA":2147, "GGCAT":1332, "GGCAC":117761, "GGCAG":8074, "GGCTA":2779, "GGCTT":95138, "GGCTC":5154, "GGCTG":117651, "GGCCA":5757, "GGCCT":2611, "GGCCC":14449, "GGCCG":23198, "GGCGA":3451, "GGCGT":2864, "GGCGC":1989, "GGCGG":7538, "GGGAA":5886, "GGGAT":17397, "GGGAC":4448, "GGGAG":1491, "GGGTA":137288, "GGGTT":22233, "GGGTC":735, "GGGTG":7065, "GGGCA":1330, "GGGCT":65798, "GGGCC":13611, "GGGCG":1225, "GGGGA":11933, "GGGGT":56048, "GGGGC":15466, "GGGGG":57025 }, "overrepresented_sequences": { } }, "command": "fastp -i /data/MicrobiomaFrangos/input/ICFS1_R1.fastq -I /data/MicrobiomaFrangos/input/ICFS1_R2.fastq -o /data/MicrobiomaFrangos/output/fastp/ICFS1_cleaned_R1.fastq -O /data/MicrobiomaFrangos/output/fastp/ICFS1_cleaned_R2.fastq --disable_adapter_trimming --average_qual 10 --cut_right --cut_right_window_size 5 --cut_right_mean_quality 10 --html /data/MicrobiomaFrangos/output/fastp/ICFS1_R1.html --json /data/MicrobiomaFrangos/output/fastp/ICFS1_R1.json " }