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"read2_before_filtering": { "total_reads": 151673, "total_bases": 45538484, "q20_bases": 44634625, "q30_bases": 42111762, "total_cycles": 301, "quality_curves": { 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"CTCCC":203253, "CTCCG":91299, "CTCGA":945, "CTCGT":630, "CTCGC":14155, "CTCGG":22235, "CTGAA":1365, "CTGAT":2327, "CTGAC":108146, "CTGAG":66942, "CTGTA":1434, "CTGTT":147940, "CTGTC":24043, "CTGTG":539, "CTGCA":40617, "CTGCT":149636, "CTGCC":27616, "CTGCG":69143, "CTGGA":73308, "CTGGT":80162, "CTGGC":148820, "CTGGG":31602, "CCAAA":22840, "CCAAT":6664, "CCAAC":9133, "CCAAG":2462, "CCATA":12504, "CCATT":1261, "CCATC":2963, "CCATG":13302, "CCACA":18764, "CCACT":98605, "CCACC":119691, "CCACG":140693, "CCAGA":111762, "CCAGT":279555, "CCAGC":50686, "CCAGG":163903, "CCTAA":63752, "CCTAT":4972, "CCTAC":135496, "CCTAG":2300, "CCTTA":3121, "CCTTT":111947, "CCTTC":150885, "CCTTG":2928, "CCTCA":91201, "CCTCT":166051, "CCTCC":216464, "CCTCG":2090, "CCTGA":77690, "CCTGT":149332, "CCTGC":123120, "CCTGG":78787, "CCCAA":7278, "CCCAT":16505, "CCCAC":147145, "CCCAG":269891, "CCCTA":58746, "CCCTT":82029, "CCCTC":138642, "CCCTG":16556, "CCCCA":150568, "CCCCT":118944, "CCCCC":201684, "CCCCG":18415, 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"CGGTG":7655, "CGGCA":29107, "CGGCT":209610, "CGGCC":2345, "CGGCG":8819, "CGGGA":62053, "CGGGT":145834, "CGGGC":106746, "CGGGG":137028, "GAAAA":28600, "GAAAT":79262, "GAAAC":137332, "GAAAG":92612, "GAATA":150903, "GAATT":94482, "GAATC":2896, "GAATG":14112, "GAACA":2467, "GAACT":86301, "GAACC":1739, "GAACG":1521, "GAAGA":256893, "GAAGT":43183, "GAAGC":140527, "GAAGG":209769, "GATAA":41566, "GATAT":11898, "GATAC":2578, "GATAG":2615, "GATTA":505, "GATTT":51723, "GATTC":160, "GATTG":36464, "GATCA":610, "GATCT":8870, "GATCC":429, "GATCG":976, "GATGA":36604, "GATGT":79457, "GATGC":136388, "GATGG":4031, "GACAA":4627, "GACAT":174, "GACAC":288, "GACAG":4475, "GACTA":22985, "GACTT":9828, "GACTC":549, "GACTG":30838, "GACCA":107, "GACCT":445, "GACCC":12895, "GACCG":768, "GACGA":26345, "GACGT":66658, "GACGC":30087, "GACGG":103217, "GAGAA":13955, "GAGAT":2018, "GAGAC":9261, "GAGAG":53190, "GAGTA":65597, "GAGTT":706, "GAGTC":1028, "GAGTG":126546, "GAGCA":10213, "GAGCT":902, "GAGCC":645, 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"GGAAC":87203, "GGAAG":194606, "GGATA":13603, "GGATT":80015, "GGATC":6804, "GGATG":16853, "GGACA":3047, "GGACT":23846, "GGACC":241, "GGACG":17708, "GGAGA":73913, "GGAGT":83845, "GGAGC":43258, "GGAGG":212269, "GGTAA":152930, "GGTAT":22925, "GGTAC":72732, "GGTAG":14650, "GGTTA":6410, "GGTTT":98226, "GGTTC":1733, "GGTTG":77282, "GGTCA":820, "GGTCT":31898, "GGTCC":286, "GGTCG":30091, "GGTGA":27738, "GGTGT":46750, "GGTGC":120540, "GGTGG":81980, "GGCAA":53066, "GGCAT":2421, "GGCAC":1332, "GGCAG":83960, "GGCTA":210650, "GGCTT":27791, "GGCTC":134823, "GGCTG":78283, "GGCCA":1177, "GGCCT":98676, "GGCCC":1074, "GGCCG":2565, "GGCGA":44374, "GGCGT":118616, "GGCGC":75178, "GGCGG":137007, "GGGAA":304850, "GGGAT":21404, "GGGAC":33040, "GGGAG":210852, "GGGTA":2706, "GGGTT":76832, "GGGTC":36150, "GGGTG":198581, "GGGCA":51715, "GGGCT":156242, "GGGCC":2663, "GGGCG":253722, "GGGGA":260132, "GGGGT":1174, "GGGGC":111489, "GGGGG":189619 }, "overrepresented_sequences": { } }, "read2_after_filtering": { "total_reads": 150412, "total_bases": 45159729, "q20_bases": 44437744, "q30_bases": 42065093, "total_cycles": 301, "quality_curves": { 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"CTCGA":889, "CTCGT":553, "CTCGC":13902, "CTCGG":22026, "CTGAA":1234, "CTGAT":2274, "CTGAC":107730, "CTGAG":66666, "CTGTA":1380, "CTGTT":147203, "CTGTC":23876, "CTGTG":454, "CTGCA":40350, "CTGCT":149015, "CTGCC":27276, "CTGCG":68826, "CTGGA":72967, "CTGGT":79643, "CTGGC":148245, "CTGGG":31327, "CCAAA":22203, "CCAAT":6271, "CCAAC":8416, "CCAAG":2068, "CCATA":12237, "CCATT":987, "CCATC":2532, "CCATG":13166, "CCACA":18050, "CCACT":97685, "CCACC":117641, "CCACG":139877, "CCAGA":111154, "CCAGT":278138, "CCAGC":50234, "CCAGG":162920, "CCTAA":63233, "CCTAT":4765, "CCTAC":134643, "CCTAG":2159, "CCTTA":2891, "CCTTT":110767, "CCTTC":149393, "CCTTG":2820, "CCTCA":90376, "CCTCT":164909, "CCTCC":213753, "CCTCG":1830, "CCTGA":77288, "CCTGT":148587, "CCTGC":122487, "CCTGG":78306, "CCCAA":6228, "CCCAT":15905, "CCCAC":144882, "CCCAG":268321, "CCCTA":58158, "CCCTT":80796, "CCCTC":136515, "CCCTG":16141, "CCCCA":147711, "CCCCT":116554, "CCCCC":190181, "CCCCG":17331, "CCCGA":10177, "CCCGT":5650, "CCCGC":18891, "CCCGG":108636, "CCGAA":4913, "CCGAT":78968, "CCGAC":7354, "CCGAG":3988, "CCGTA":102616, "CCGTT":1984, "CCGTC":34121, "CCGTG":1851, "CCGCA":5611, "CCGCT":160414, "CCGCC":252857, "CCGCG":157396, "CCGGA":73650, "CCGGT":75845, "CCGGC":10676, "CCGGG":131912, "CGAAA":243, "CGAAT":7714, "CGAAC":1480, "CGAAG":1429, "CGATA":2701, "CGATT":65446, "CGATC":9546, "CGATG":2340, "CGACA":1875, "CGACT":9016, "CGACC":537, "CGACG":208, "CGAGA":59787, "CGAGT":320, "CGAGC":27537, "CGAGG":3245, "CGTAA":821, "CGTAT":160028, "CGTAC":894, "CGTAG":104332, "CGTTA":994, "CGTTT":2127, "CGTTC":653, "CGTTG":163, "CGTCA":123060, "CGTCT":24721, "CGTCC":69338, "CGTCG":1139, "CGTGA":196, "CGTGT":797, "CGTGC":111595, "CGTGG":1761, "CGCAA":30002, "CGCAT":149246, "CGCAC":116338, "CGCAG":7543, "CGCTA":177629, "CGCTT":322160, "CGCTC":48539, "CGCTG":5000, "CGCCA":122093, "CGCCT":267105, "CGCCC":114587, "CGCCG":9093, "CGCGA":1441, "CGCGT":979, "CGCGC":10204, "CGCGG":157469, "CGGAA":13005, "CGGAT":59332, "CGGAC":14740, "CGGAG":66918, "CGGTA":68703, "CGGTT":43203, "CGGTC":609, "CGGTG":4215, "CGGCA":8579, "CGGCT":150079, "CGGCC":5788, "CGGCG":350, "CGGGA":10283, "CGGGT":53931, "CGGGC":14430, "CGGGG":91750, "GAAAA":4146, "GAAAT":627, "GAAAC":20608, "GAAAG":10946, "GAATA":1317, "GAATT":151234, "GAATC":2142, "GAATG":5975, "GAACA":3159, "GAACT":7673, "GAACC":1850, "GAACG":3060, "GAAGA":1414, "GAAGT":599, "GAAGC":162, "GAAGG":1224, "GATAA":67146, "GATAT":570, "GATAC":408, "GATAG":540, "GATTA":65685, "GATTT":77524, "GATTC":1810, "GATTG":7343, "GATCA":327, "GATCT":77816, "GATCC":6884, "GATCG":322, "GATGA":158, "GATGT":816, "GATGC":61813, "GATGG":2066, "GACAA":18478, "GACAT":179, "GACAC":1463, "GACAG":9463, "GACTA":147879, "GACTT":133104, "GACTC":67823, "GACTG":3078, "GACCA":3851, "GACCT":1299, "GACCC":6406, "GACCG":15529, "GACGA":63, "GACGT":765, "GACGC":543, "GACGG":244, "GAGAA":543, "GAGAT":218, "GAGAC":59975, "GAGAG":30859, "GAGTA":303, "GAGTT":68632, "GAGTC":754, "GAGTG":315, "GAGCA":1488, "GAGCT":10161, "GAGCC":189133, "GAGCG":66428, "GAGGA":215, "GAGGT":9148, "GAGGC":679, "GAGGG":2478, "GTAAA":49088, "GTAAT":90246, "GTAAC":1014, "GTAAG":22813, "GTATA":7026, "GTATT":222145, "GTATC":209607, "GTATG":3247, "GTACA":278, "GTACT":3607, "GTACC":864, "GTACG":866, "GTAGA":421, "GTAGT":79844, "GTAGC":30062, "GTAGG":850, "GTTAA":31307, "GTTAT":3627, "GTTAC":66812, "GTTAG":140766, "GTTTA":2180, "GTTTT":24459, "GTTTC":99822, "GTTTG":148316, "GTTCA":3580, "GTTCT":5330, "GTTCC":160800, "GTTCG":2708, "GTTGA":130988, "GTTGT":181, "GTTGC":4281, "GTTGG":1532, "GTCAA":470, "GTCAT":4557, "GTCAC":386, "GTCAG":148845, "GTCTA":24341, "GTCTT":67072, "GTCTC":11513, "GTCTG":990, "GTCCA":136129, "GTCCT":626, "GTCCC":20230, "GTCCG":1557, "GTCGA":332, "GTCGT":497, "GTCGC":9278, "GTCGG":588, "GTGAA":139, "GTGAT":242, "GTGAC":230, "GTGAG":331, "GTGTA":97, "GTGTT":82431, "GTGTC":25923, "GTGTG":739, "GTGCA":571, "GTGCT":2588, "GTGCC":46222, "GTGCG":65683, "GTGGA":103, "GTGGT":1502, "GTGGC":420, "GTGGG":196, "GCAAA":10056, "GCAAT":17832, "GCAAC":30478, "GCAAG":3169, "GCATA":493, "GCATT":149816, "GCATC":6017, "GCATG":1487, "GCACA":3907, "GCACT":69035, "GCACC":185825, "GCACG":149387, "GCAGA":9658, "GCAGT":110538, "GCAGC":2962, "GCAGG":18849, "GCTAA":1661, "GCTAT":2349, "GCTAC":157715, "GCTAG":30103, "GCTTA":41481, "GCTTT":230299, "GCTTC":13355, "GCTTG":171151, "GCTCA":1128, "GCTCT":4293, "GCTCC":179103, "GCTCG":12172, "GCTGA":2162, "GCTGT":1141, "GCTGC":154777, "GCTGG":155030, "GCCAA":5397, "GCCAT":1985, "GCCAC":139124, "GCCAG":69793, "GCCTA":35724, "GCCTT":178989, "GCCTC":105534, "GCCTG":88003, "GCCCA":124434, "GCCCT":21814, "GCCCC":67651, "GCCCG":71510, "GCCGA":5546, "GCCGT":44783, "GCCGC":141043, "GCCGG":5969, "GCGAA":104, "GCGAT":210, "GCGAC":1557, "GCGAG":242, "GCGTA":429, "GCGTT":1029, "GCGTC":98580, "GCGTG":65804, "GCGCA":1528, "GCGCT":67942, "GCGCC":10844, "GCGCG":1024, "GCGGA":916, "GCGGT":10305, "GCGGC":148476, "GCGGG":238, "GGAAA":313, "GGAAT":150752, "GGAAC":593, "GGAAG":115, "GGATA":61558, "GGATT":76827, "GGATC":671, "GGATG":985, "GGACA":16281, "GGACT":1190, "GGACC":213, "GGACG":69, "GGAGA":200, "GGAGT":68571, "GGAGC":450, "GGAGG":8712, "GGTAA":516, "GGTAT":216366, "GGTAC":2825, "GGTAG":738, "GGTTA":18212, "GGTTT":9738, "GGTTC":408, "GGTTG":128404, "GGTCA":83, "GGTCT":2012, "GGTCC":311, "GGTCG":385, "GGTGA":84, "GGTGT":82518, "GGTGC":742, "GGTGG":307, "GGCAA":3674, "GGCAT":1057, "GGCAC":153492, "GGCAG":7713, "GGCTA":921, "GGCTT":38670, "GGCTC":483, "GGCTG":156798, "GGCCA":845, "GGCCT":362, "GGCCC":11414, "GGCCG":79314, "GGCGA":301, "GGCGT":667, "GGCGC":449, "GGCGG":722, "GGGAA":9162, "GGGAT":74698, "GGGAC":1074, "GGGAG":457, "GGGTA":150226, "GGGTT":29521, "GGGTC":1558, "GGGTG":341, "GGGCA":2152, "GGGCT":15479, "GGGCC":66889, "GGGCG":291, "GGGGA":66282, "GGGGT":61488, "GGGGC":66601, "GGGGG":93763 }, "overrepresented_sequences": { } }, "command": "fastp -i /data/MicrobiomaFrangos/input/IAMS2_R1.fastq -I /data/MicrobiomaFrangos/input/IAMS2_R2.fastq -o /data/MicrobiomaFrangos/output/fastp/IAMS2_cleaned_R1.fastq -O /data/MicrobiomaFrangos/output/fastp/IAMS2_cleaned_R2.fastq --disable_adapter_trimming --average_qual 10 --cut_right --cut_right_window_size 5 --cut_right_mean_quality 10 --html /data/MicrobiomaFrangos/output/fastp/IAMS2_R1.html --json /data/MicrobiomaFrangos/output/fastp/IAMS2_R1.json " }