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"read2_after_filtering": { "total_reads": 131642, "total_bases": 39011329, "q20_bases": 36629488, "q30_bases": 30959108, "total_cycles": 301, "quality_curves": { 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"CGCCC":133232, "CGCCG":9770, "CGCGA":917, "CGCGT":2207, "CGCGC":4559, "CGCGG":105882, "CGGAA":2953, "CGGAT":27982, "CGGAC":78510, "CGGAG":13697, "CGGTA":14821, "CGGTT":133321, "CGGTC":3051, "CGGTG":4656, "CGGCA":3291, "CGGCT":108043, "CGGCC":5384, "CGGCG":6493, "CGGGA":2681, "CGGGT":52139, "CGGGC":4014, "CGGGG":32587, "GAAAA":45818, "GAAAT":1637, "GAAAC":3732, "GAAAG":1816, "GAATA":1401, "GAATT":24706, "GAATC":1035, "GAATG":679, "GAACA":1797, "GAACT":1793, "GAACC":35697, "GAACG":1895, "GAAGA":1091, "GAAGT":2226, "GAAGC":1175, "GAAGG":56116, "GATAA":28899, "GATAT":1942, "GATAC":1466, "GATAG":1639, "GATTA":13721, "GATTT":22744, "GATTC":1841, "GATTG":971, "GATCA":991, "GATCT":16237, "GATCC":1951, "GATCG":667, "GATGA":635, "GATGT":992, "GATGC":112077, "GATGG":6290, "GACAA":77439, "GACAT":1986, "GACAC":2442, "GACAG":25361, "GACTA":130180, "GACTT":98566, "GACTC":14540, "GACTG":1520, "GACCA":103851, "GACCT":21867, "GACCC":2903, "GACCG":4581, "GACGA":1131, "GACGT":3378, "GACGC":1800, "GACGG":1565, "GAGAA":1130, "GAGAT":900, "GAGAC":13933, "GAGAG":84596, "GAGTA":1166, "GAGTT":116438, "GAGTC":1328, "GAGTG":1740, "GAGCA":1555, "GAGCT":2507, "GAGCC":244316, "GAGCG":13879, "GAGGA":561, "GAGGT":1003, "GAGGC":5860, "GAGGG":43763, "GTAAA":4336, "GTAAT":17284, "GTAAC":1239, "GTAAG":4079, "GTATA":2233, "GTATT":124106, "GTATC":143052, "GTATG":3155, "GTACA":1291, "GTACT":4562, "GTACC":1710, "GTACG":1375, "GTAGA":1422, "GTAGT":89896, "GTAGC":7442, "GTAGG":5631, "GTTAA":71922, "GTTAT":2505, "GTTAC":11516, "GTTAG":101778, "GTTTA":9363, "GTTTT":6605, "GTTTC":116599, "GTTTG":30091, "GTTCA":37867, "GTTCT":104283, "GTTCC":168563, "GTTCG":104999, "GTTGA":58812, "GTTGT":2583, "GTTGC":118218, "GTTGG":4915, "GTCAA":3676, "GTCAT":861, "GTCAC":1433, "GTCAG":125207, "GTCTA":3488, "GTCTT":17255, "GTCTC":2562, "GTCTG":1349, "GTCCA":20517, "GTCCT":24822, "GTCCC":3241, "GTCCG":1506, "GTCGA":633, "GTCGT":3733, "GTCGC":20857, "GTCGG":1285, "GTGAA":630, "GTGAT":728, "GTGAC":740, "GTGAG":908, "GTGTA":411, "GTGTT":111999, "GTGTC":4672, "GTGTG":999, "GTGCA":3692, "GTGCT":6985, "GTGCC":6813, "GTGCG":12085, "GTGGA":3670, "GTGGT":1938, "GTGGC":12247, "GTGGG":4456, "GCAAA":1750, "GCAAT":38766, "GCAAC":23143, "GCAAG":2507, "GCATA":1576, "GCATT":127240, "GCATC":2456, "GCATG":2391, "GCACA":6072, "GCACT":143098, "GCACC":36877, "GCACG":100521, "GCAGA":105473, "GCAGT":61336, "GCAGC":5164, "GCAGG":6168, "GCTAA":5932, "GCTAT":6720, "GCTAC":227794, "GCTAG":4320, "GCTTA":11641, "GCTTT":337533, "GCTTC":6231, "GCTTG":120842, "GCTCA":1543, "GCTCT":3827, "GCTCC":29999, "GCTCG":65063, "GCTGA":2119, "GCTGT":1623, "GCTGC":109128, "GCTGG":118442, "GCCAA":4606, "GCCAT":1906, "GCCAC":221114, "GCCAG":16304, "GCCTA":5360, "GCCTT":131118, "GCCTC":117297, "GCCTG":113855, "GCCCA":114786, "GCCCT":25354, "GCCCC":17207, "GCCCG":41555, "GCCGA":98728, "GCCGT":6063, "GCCGC":130209, "GCCGG":6347, "GCGAA":1058, "GCGAT":887, "GCGAC":1933, "GCGAG":930, "GCGTA":1204, "GCGTT":2633, "GCGTC":119739, "GCGTG":12835, "GCGCA":2181, "GCGCT":74117, "GCGCC":5352, "GCGCG":2635, "GCGGA":2393, "GCGGT":5602, "GCGGC":102068, "GCGGG":7891, "GGAAA":3125, "GGAAT":22667, "GGAAC":1561, "GGAAG":722, "GGATA":25406, "GGATT":18542, "GGATC":2932, "GGATG":1426, "GGACA":77045, "GGACT":4226, "GGACC":2147, "GGACG":3187, "GGAGA":1502, "GGAGT":115235, "GGAGC":1598, "GGAGG":1472, "GGTAA":1051, "GGTAT":143088, "GGTAC":1368, "GGTAG":6166, "GGTTA":71001, "GGTTT":32451, "GGTTC":2232, "GGTTG":69141, "GGTCA":1054, "GGTCT":1090, "GGTCC":3345, "GGTCG":2714, "GGTGA":619, "GGTGT":111587, "GGTGC":9311, "GGTGG":13221, "GGCAA":2453, "GGCAT":1387, "GGCAC":107036, "GGCAG":4893, "GGCTA":6632, "GGCTT":109859, "GGCTC":5254, "GGCTG":110112, "GGCCA":6546, "GGCCT":2753, "GGCCC":8950, "GGCCG":16851, "GGCGA":1568, "GGCGT":2042, "GGCGC":2059, "GGCGG":6110, "GGGAA":1910, "GGGAT":14030, "GGGAC":3699, "GGGAG":1715, "GGGTA":132166, "GGGTT":21517, "GGGTC":3486, "GGGTG":6879, "GGGCA":1351, "GGGCT":50142, "GGGCC":14689, "GGGCG":1261, "GGGGA":12969, "GGGGT":49056, "GGGGC":17030, "GGGGG":50412 }, "overrepresented_sequences": { } }, "command": "fastp -i /data/MicrobiomaFrangos/input/DPFS2_R1.fastq -I /data/MicrobiomaFrangos/input/DPFS2_R2.fastq -o /data/MicrobiomaFrangos/output/fastp/DPFS2_cleaned_R1.fastq -O /data/MicrobiomaFrangos/output/fastp/DPFS2_cleaned_R2.fastq --disable_adapter_trimming --average_qual 10 --cut_right --cut_right_window_size 5 --cut_right_mean_quality 10 --html /data/MicrobiomaFrangos/output/fastp/DPFS2_R1.html --json /data/MicrobiomaFrangos/output/fastp/DPFS2_R1.json " }