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"read2_before_filtering": { "total_reads": 149702, "total_bases": 44911514, "q20_bases": 42068742, "q30_bases": 35565364, "total_cycles": 301, "quality_curves": { 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"CGCGT":2854, "CGCGC":5932, "CGCGG":122646, "CGGAA":2679, "CGGAT":10729, "CGGAC":37969, "CGGAG":77133, "CGGTA":94397, "CGGTT":53130, "CGGTC":2336, "CGGTG":2831, "CGGCA":3342, "CGGCT":126016, "CGGCC":6321, "CGGCG":8759, "CGGGA":3180, "CGGGT":67750, "CGGGC":3095, "CGGGG":138982, "GAAAA":9221, "GAAAT":2366, "GAAAC":24826, "GAAAG":895, "GAATA":1855, "GAATT":133542, "GAATC":1327, "GAATG":489, "GAACA":6974, "GAACT":1905, "GAACC":6221, "GAACG":1508, "GAAGA":486, "GAAGT":1239, "GAAGC":987, "GAAGG":4912, "GATAA":7356, "GATAT":1796, "GATAC":1234, "GATAG":1691, "GATTA":85925, "GATTT":93730, "GATTC":2207, "GATTG":1691, "GATCA":874, "GATCT":91700, "GATCC":2159, "GATCG":391, "GATGA":713, "GATGT":944, "GATGC":101265, "GATGG":2658, "GACAA":36115, "GACAT":1415, "GACAC":1947, "GACAG":2163, "GACTA":147275, "GACTT":133384, "GACTC":91387, "GACTG":1178, "GACCA":39022, "GACCT":2589, "GACCC":27271, "GACCG":2661, "GACGA":479, "GACGT":1792, "GACGC":1956, "GACGG":2656, "GAGAA":528, "GAGAT":1523, "GAGAC":90160, "GAGAG":40370, "GAGTA":2942, "GAGTT":95910, "GAGTC":2313, "GAGTG":1620, "GAGCA":1066, "GAGCT":1958, "GAGCC":203218, "GAGCG":93523, "GAGGA":274, "GAGGT":1491, "GAGGC":3893, "GAGGG":8803, "GTAAA":3417, "GTAAT":90741, "GTAAC":2386, "GTAAG":9822, "GTATA":2525, "GTATT":220738, "GTATC":240880, "GTATG":975, "GTACA":925, "GTACT":4276, "GTACC":2063, "GTACG":1030, "GTAGA":852, "GTAGT":43095, "GTAGC":4803, "GTAGG":1910, "GTTAA":24634, "GTTAT":9553, "GTTAC":41939, "GTTAG":118875, "GTTTA":4968, "GTTTT":15083, "GTTTC":51493, "GTTTG":140611, "GTTCA":6164, "GTTCT":23052, "GTTCC":144469, "GTTCG":14991, "GTTGA":125164, "GTTGT":1596, "GTTGC":22038, "GTTGG":2618, "GTCAA":931, "GTCAT":1386, "GTCAC":1391, "GTCAG":146208, "GTCTA":2583, "GTCTT":95621, "GTCTC":27845, "GTCTG":1977, "GTCCA":105260, "GTCCT":1663, "GTCCC":4311, "GTCCG":2325, "GTCGA":778, "GTCGT":2002, "GTCGC":9507, "GTCGG":1632, "GTGAA":175, "GTGAT":557, "GTGAC":1332, "GTGAG":1224, "GTGTA":352, "GTGTT":54693, "GTGTC":5533, "GTGTG":627, "GTGCA":973, "GTGCT":14054, "GTGCC":6915, "GTGCG":85192, "GTGGA":846, "GTGGT":2015, "GTGGC":8524, "GTGGG":5115, "GCAAA":725, "GCAAT":6364, "GCAAC":6136, "GCAAG":2328, "GCATA":1155, "GCATT":145444, "GCATC":9196, "GCATG":2545, "GCACA":2568, "GCACT":55429, "GCACC":187600, "GCACG":117933, "GCAGA":14091, "GCAGT":103428, "GCAGC":3526, "GCAGG":5600, "GCTAA":612, "GCTAT":1721, "GCTAC":158498, "GCTAG":5189, "GCTTA":8338, "GCTTT":306884, "GCTTC":5842, "GCTTG":217130, "GCTCA":1259, "GCTCT":9821, "GCTCC":140744, "GCTCG":35117, "GCTGA":1759, "GCTGT":1477, "GCTGC":124538, "GCTGG":132642, "GCCAA":2715, "GCCAT":1254, "GCCAC":185534, "GCCAG":96111, "GCCTA":17366, "GCCTT":153581, "GCCTC":58445, "GCCTG":129210, "GCCCA":129818, "GCCCT":6017, "GCCCC":20113, "GCCCG":100088, "GCCGA":13635, "GCCGT":6233, "GCCGC":143061, "GCCGG":29959, "GCGAA":649, "GCGAT":1439, "GCGAC":1720, "GCGAG":1423, "GCGTA":1945, "GCGTT":4425, "GCGTC":141091, "GCGTG":87982, "GCGCA":2199, "GCGCT":116316, "GCGCC":7212, "GCGCG":3455, "GCGGA":1964, "GCGGT":4359, "GCGGC":120397, "GCGGG":9486, "GGAAA":1995, "GGAAT":131438, "GGAAC":1719, "GGAAG":351, "GGATA":6608, "GGATT":93955, "GGATC":1248, "GGATG":1574, "GGACA":35335, "GGACT":5009, "GGACC":2474, "GGACG":3664, "GGAGA":1221, "GGAGT":92649, "GGAGC":1130, "GGAGG":1481, "GGTAA":1077, "GGTAT":239838, "GGTAC":1493, "GGTAG":3255, "GGTTA":17241, "GGTTT":9148, "GGTTC":1752, "GGTTG":131134, "GGTCA":891, "GGTCT":1566, "GGTCC":960, "GGTCG":1957, "GGTGA":776, "GGTGT":54289, "GGTGC":8473, "GGTGG":9922, "GGCAA":1965, "GGCAT":1567, "GGCAC":121137, "GGCAG":5170, "GGCTA":1577, "GGCTT":48035, "GGCTC":4580, "GGCTG":126225, "GGCCA":4328, "GGCCT":2096, "GGCCC":10945, "GGCCG":96904, "GGCGA":973, "GGCGT":3647, "GGCGC":2500, "GGCGG":7402, "GGGAA":1559, "GGGAT":91558, "GGGAC":4751, "GGGAG":2699, "GGGTA":146940, "GGGTT":19643, "GGGTC":1210, "GGGTG":9549, "GGGCA":1124, "GGGCT":41002, "GGGCC":94230, "GGGCG":2659, "GGGGA":90368, "GGGGT":55513, "GGGGC":121677, "GGGGG":165535 }, "overrepresented_sequences": { } }, "command": "fastp -i /data/MicrobiomaFrangos/input/CPFS1_R1.fastq -I /data/MicrobiomaFrangos/input/CPFS1_R2.fastq -o /data/MicrobiomaFrangos/output/fastp/CPFS1_cleaned_R1.fastq -O /data/MicrobiomaFrangos/output/fastp/CPFS1_cleaned_R2.fastq --disable_adapter_trimming --average_qual 10 --cut_right --cut_right_window_size 5 --cut_right_mean_quality 10 --html /data/MicrobiomaFrangos/output/fastp/CPFS1_R1.html --json /data/MicrobiomaFrangos/output/fastp/CPFS1_R1.json " }