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"GGGCT":149788, "GGGCC":4212, "GGGCG":187598, "GGGGA":254378, "GGGGT":1004, "GGGGC":141640, "GGGGG":244342 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 163941, "total_bases": 49197376, "q20_bases": 48268479, "q30_bases": 45633976, "total_cycles": 301, "quality_curves": { 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"GACGC":317, "GACGG":866, "GAGAA":750, "GAGAT":904, "GAGAC":24674, "GAGAG":1466, "GAGTA":276, "GAGTT":41969, "GAGTC":1685, "GAGTG":5148, "GAGCA":10226, "GAGCT":8330, "GAGCC":172474, "GAGCG":25353, "GAGGA":195, "GAGGT":13054, "GAGGC":553, "GAGGG":7883, "GTAAA":78493, "GTAAT":47386, "GTAAC":637, "GTAAG":59830, "GTATA":8100, "GTATT":201418, "GTATC":185642, "GTATG":2355, "GTACA":1056, "GTACT":27763, "GTACC":887, "GTACG":827, "GTAGA":386, "GTAGT":142089, "GTAGC":13204, "GTAGG":11068, "GTTAA":75367, "GTTAT":5559, "GTTAC":86254, "GTTAG":157750, "GTTTA":4301, "GTTTT":77413, "GTTTC":93926, "GTTTG":159058, "GTTCA":12591, "GTTCT":31891, "GTTCC":160733, "GTTCG":13309, "GTTGA":113438, "GTTGT":1337, "GTTGC":29813, "GTTGG":2729, "GTCAA":1823, "GTCAT":30163, "GTCAC":996, "GTCAG":162815, "GTCTA":52662, "GTCTT":38980, "GTCTC":12398, "GTCTG":9712, "GTCCA":142316, "GTCCT":1178, "GTCCC":36703, "GTCCG":5441, "GTCGA":243, "GTCGT":1751, "GTCGC":22880, "GTCGG":477, "GTGAA":174, "GTGAT":1111, "GTGAC":856, "GTGAG":4110, "GTGTA":224, "GTGTT":134137, "GTGTC":28981, "GTGTG":328, "GTGCA":3005, "GTGCT":5223, "GTGCC":43449, "GTGCG":24771, "GTGGA":80, "GTGGT":8355, "GTGGC":405, "GTGGG":1957, "GCAAA":12649, "GCAAT":36772, "GCAAC":7229, "GCAAG":5446, "GCATA":1921, "GCATT":163015, "GCATC":13484, "GCATG":8556, "GCACA":1673, "GCACT":85536, "GCACC":113392, "GCACG":165001, "GCAGA":17281, "GCAGT":137466, "GCAGC":11903, "GCAGG":26880, "GCTAA":8383, "GCTAT":12416, "GCTAC":193332, "GCTAG":2293, "GCTTA":42399, "GCTTT":218531, "GCTTC":12686, "GCTTG":170645, "GCTCA":5476, "GCTCT":3948, "GCTCC":227469, "GCTCG":25123, "GCTGA":2627, "GCTGT":13223, "GCTGC":181029, "GCTGG":160720, "GCCAA":24630, "GCCAT":7163, "GCCAC":199958, "GCCAG":34620, "GCCTA":67836, "GCCTT":170305, "GCCTC":194184, "GCCTG":44000, "GCCCA":108458, "GCCCT":36740, "GCCCC":99488, "GCCCG":53349, "GCCGA":18621, "GCCGT":36354, "GCCGC":135181, "GCCGG":13115, "GCGAA":96, "GCGAT":1382, "GCGAC":2452, "GCGAG":65, "GCGTA":483, "GCGTT":743, "GCGTC":81870, "GCGTG":24655, "GCGCA":1046, "GCGCT":28741, "GCGCC":42987, "GCGCG":1477, "GCGGA":887, "GCGGT":10162, "GCGGC":160401, "GCGGG":714, "GGAAA":262, "GGAAT":175449, "GGAAC":501, "GGAAG":110, "GGATA":89806, "GGATT":40045, "GGATC":437, "GGATG":976, "GGACA":45956, "GGACT":935, "GGACC":294, "GGACG":108, "GGAGA":218, "GGAGT":32722, "GGAGC":132, "GGAGG":5689, "GGTAA":527, "GGTAT":196877, "GGTAC":4906, "GGTAG":6502, "GGTTA":37614, "GGTTT":31145, "GGTTC":517, "GGTTG":87624, "GGTCA":507, "GGTCT":1828, "GGTCC":690, "GGTCG":615, "GGTGA":83, "GGTGT":134158, "GGTGC":1339, "GGTGG":368, "GGCAA":2579, "GGCAT":1266, "GGCAC":174632, "GGCAG":21690, "GGCTA":4109, "GGCTT":46112, "GGCTC":300, "GGCTG":165685, "GGCCA":13291, "GGCCT":361, "GGCCC":6728, "GGCCG":49146, "GGCGA":139, "GGCGT":551, "GGCGC":352, "GGCGG":4668, "GGGAA":12464, "GGGAT":36224, "GGGAC":940, "GGGAG":478, "GGGTA":168011, "GGGTT":79633, "GGGTC":1662, "GGGTG":379, "GGGCA":1069, "GGGCT":35716, "GGGCC":25530, "GGGCG":153, "GGGGA":25222, "GGGGT":84923, "GGGGC":25213, "GGGGG":60620 }, "overrepresented_sequences": { } }, "command": "fastp -i /data/MicrobiomaFrangos/input/CAFS1_R1.fastq -I /data/MicrobiomaFrangos/input/CAFS1_R2.fastq -o /data/MicrobiomaFrangos/output/fastp/CAFS1_cleaned_R1.fastq -O /data/MicrobiomaFrangos/output/fastp/CAFS1_cleaned_R2.fastq --disable_adapter_trimming --average_qual 10 --cut_right --cut_right_window_size 5 --cut_right_mean_quality 10 --html /data/MicrobiomaFrangos/output/fastp/CAFS1_R1.html --json /data/MicrobiomaFrangos/output/fastp/CAFS1_R1.json " }