Index of /chicken_output/dada2

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]ASVs.fa2024-10-16 06:59 5.0M 
[IMG]AlphaDivPlot_PD.svg2024-10-18 21:17 245K 
[IMG]AlphaDivPlot_chao1.svg2024-10-18 21:16 248K 
[IMG]AlphaDivPlot_diversity_coverage.svg2024-10-18 21:16 248K 
[IMG]AlphaDivPlot_diversity_fisher.svg2024-10-18 21:16 248K 
[IMG]AlphaDivPlot_diversity_gini_simpson.svg2024-10-18 21:16 247K 
[IMG]AlphaDivPlot_diversity_inverse_simpson.svg2024-10-18 21:16 248K 
[IMG]AlphaDivPlot_diversity_shannon.svg2024-10-18 21:16 249K 
[IMG]AlphaDivPlot_dominance_absolute.svg2024-10-18 21:17 248K 
[IMG]AlphaDivPlot_dominance_core_abundance.svg2024-10-18 21:17 246K 
[IMG]AlphaDivPlot_dominance_dbp.svg2024-10-18 21:17 247K 
[IMG]AlphaDivPlot_dominance_dmn.svg2024-10-18 21:17 247K 
[IMG]AlphaDivPlot_dominance_gini.svg2024-10-18 21:17 248K 
[IMG]AlphaDivPlot_dominance_relative.svg2024-10-18 21:17 247K 
[IMG]AlphaDivPlot_dominance_simpson.svg2024-10-18 21:17 247K 
[IMG]AlphaDivPlot_evenness_bulla.svg2024-10-18 21:17 246K 
[IMG]AlphaDivPlot_evenness_camargo.svg2024-10-18 21:16 244K 
[IMG]AlphaDivPlot_evenness_evar.svg2024-10-18 21:17 247K 
[IMG]AlphaDivPlot_evenness_pielou.svg2024-10-18 21:17 246K 
[IMG]AlphaDivPlot_evenness_simpson.svg2024-10-18 21:17 246K 
[IMG]AlphaDivPlot_observed.svg2024-10-18 21:16 248K 
[IMG]AlphaDivPlot_rarity_log_modulo_skewness.svg2024-10-18 21:17 244K 
[IMG]AlphaDivPlot_rarity_low_abundance.svg2024-10-18 21:17 246K 
[IMG]AlphaDivPlot_rarity_rare_abundance.svg2024-10-18 21:17 248K 
[IMG]Amplicons_Quality_Score_DADA2_filterAndTrim.svg2024-10-15 18:50 28M 
[IMG]Amplicons_Quality_Score_DADA2_filterAndTrim_sample.svg2024-10-15 18:53 494K 
[IMG]Amplicons_Quality_Score_DADA2_learnErrors_1.svg2024-10-15 21:16 126K 
[IMG]Amplicons_Quality_Score_DADA2_learnErrors_2.svg2024-10-15 21:16 126K 
[IMG]Amplicons_Quality_Score_pre_DADA2.svg2024-10-15 18:22 32M 
[IMG]Amplicons_Quality_Score_pre_DADA2_sample.svg2024-10-15 18:53 557K 
[ ]Analysis_Amplicon_RDP.RData2024-10-30 20:41 2.2G 
[IMG]CompoPlot_genus.svg2024-10-18 21:16 320K 
[IMG]CompoPlot_phylum.svg2024-10-18 21:16 242K 
[ ]ContaminantFree_ASVs.fa2024-10-16 12:06 4.9M 
[ ]Differential_Abundance.xlsx2024-10-18 21:33 265K 
[IMG]GammaDivPlot_PD.svg2024-10-18 21:17 17K 
[IMG]GammaDivPlot_chao1.svg2024-10-18 21:16 18K 
[IMG]GammaDivPlot_diversity_coverage.svg2024-10-18 21:16 18K 
[IMG]GammaDivPlot_diversity_fisher.svg2024-10-18 21:16 18K 
[IMG]GammaDivPlot_diversity_gini_simpson.svg2024-10-18 21:16 18K 
[IMG]GammaDivPlot_diversity_inverse_simpson.svg2024-10-18 21:16 18K 
[IMG]GammaDivPlot_diversity_shannon.svg2024-10-18 21:16 17K 
[IMG]GammaDivPlot_dominance_absolute.svg2024-10-18 21:17 17K 
[IMG]GammaDivPlot_dominance_core_abundance.svg2024-10-18 21:17 17K 
[IMG]GammaDivPlot_dominance_dbp.svg2024-10-18 21:17 17K 
[IMG]GammaDivPlot_dominance_dmn.svg2024-10-18 21:17 18K 
[IMG]GammaDivPlot_dominance_gini.svg2024-10-18 21:17 18K 
[IMG]GammaDivPlot_dominance_relative.svg2024-10-18 21:17 17K 
[IMG]GammaDivPlot_dominance_simpson.svg2024-10-18 21:17 18K 
[IMG]GammaDivPlot_evenness_bulla.svg2024-10-18 21:17 18K 
[IMG]GammaDivPlot_evenness_camargo.svg2024-10-18 21:16 17K 
[IMG]GammaDivPlot_evenness_evar.svg2024-10-18 21:17 18K 
[IMG]GammaDivPlot_evenness_pielou.svg2024-10-18 21:17 18K 
[IMG]GammaDivPlot_evenness_simpson.svg2024-10-18 21:17 17K 
[IMG]GammaDivPlot_observed.svg2024-10-18 21:16 18K 
[IMG]GammaDivPlot_rarity_log_modulo_skewness.svg2024-10-18 21:17 17K 
[IMG]GammaDivPlot_rarity_low_abundance.svg2024-10-18 21:17 18K 
[IMG]GammaDivPlot_rarity_rare_abundance.svg2024-10-18 21:17 17K 
[IMG]Heatmap_DA_DESeq2_CECUM.svg2024-10-18 21:33 189K 
[IMG]Heatmap_DA_DESeq2_DUODENUM.svg2024-10-18 21:33 332K 
[IMG]Heatmap_DA_DESeq2_ILEUM.svg2024-10-18 21:33 405K 
[IMG]Heatmap_DA_DESeq2_JEJUNUM.svg2024-10-18 21:33 281K 
[IMG]Hill_profile_alpha_SAMPLE.svg2024-10-18 21:31 137K 
[IMG]Hill_profile_alpha_SEGMENT_TREATMENT.svg2024-10-18 21:31 84K 
[IMG]Hill_profile_alpha_log_SEGMENT_TREATMENT.svg2024-10-18 21:31 92K 
[IMG]Hill_profile_gamma.svg2024-10-18 21:32 35K 
[TXT]MA_counts.txt2024-10-30 20:40 4.4M 
[TXT]MA_metadata.txt2024-10-30 20:40 11K 
[TXT]MA_taxonomy.txt2024-10-30 20:40 1.2M 
[ ]MA_tree.nwk2024-10-30 20:40 378K 
[IMG]PCoA_bray_SAMPLE.svg2024-10-18 21:33 29K 
[IMG]PCoA_bray_SEGMENT_TREATMENT.svg2024-10-18 21:33 38K 
[IMG]PCoA_jaccard_SAMPLE.svg2024-10-18 21:33 34K 
[IMG]PCoA_jaccard_SEGMENT_TREATMENT.svg2024-10-18 21:33 38K 
[IMG]PCoA_unwei_unifrac_SAMPLE.svg2024-10-18 21:33 34K 
[IMG]PCoA_unwei_unifrac_SEGMENT_TREATMENT.svg2024-10-18 21:33 38K 
[IMG]PCoA_wei_unifrac_SAMPLE.svg2024-10-18 21:33 35K 
[IMG]PCoA_wei_unifrac_SEGMENT_TREATMENT.svg2024-10-18 21:33 37K 
[IMG]Rarecurve_DADA2.svg2024-10-17 09:55 649K 
[IMG]Rarecurve_DADA2_rarefied.svg2024-10-18 20:20 380K 
[IMG]Rarecurve_SAMPLE_DADA2.svg2024-10-17 10:07 9.0M 
[IMG]Rarecurve_SAMPLE_DADA2_rarefied.svg2024-10-18 20:23 4.2M 
[IMG]Rarecurve_SEGMENT_DADA2.svg2024-10-17 10:07 2.4M 
[IMG]Rarecurve_SEGMENT_DADA2_rarefied.svg2024-10-18 20:23 863K 
[IMG]Rarecurve_SEX_DADA2.svg2024-10-17 10:06 1.1M 
[IMG]Rarecurve_SEX_DADA2_rarefied.svg2024-10-18 20:23 400K 
[IMG]Rarecurve_TREATMENT_DADA2.svg2024-10-17 10:07 1.7M 
[IMG]Rarecurve_TREATMENT_DADA2_rarefied.svg2024-10-18 20:23 769K 
[ ]Shared-ASVs.xlsx2024-10-18 21:12 61K 
[IMG]UpSet_asvs_CECUM.svg2024-10-18 21:16 76K 
[IMG]UpSet_asvs_DUODENUM.svg2024-10-18 21:14 73K 
[IMG]UpSet_asvs_ILEUM.svg2024-10-18 21:15 74K 
[IMG]UpSet_asvs_JEJUNUM.svg2024-10-18 21:14 74K 
[IMG]UpSet_genus_CECUM.svg2024-10-18 21:16 73K 
[IMG]UpSet_genus_DUODENUM.svg2024-10-18 21:14 70K 
[IMG]UpSet_genus_ILEUM.svg2024-10-18 21:15 74K 
[IMG]UpSet_genus_JEJUNUM.svg2024-10-18 21:14 69K 
[IMG]aHeatmap_CECUM.svg2024-10-18 21:33 1.1M 
[IMG]aHeatmap_DUODENUM.svg2024-10-18 21:33 1.1M 
[IMG]aHeatmap_ILEUM.svg2024-10-18 21:33 1.1M 
[IMG]aHeatmap_JEJUNUM.svg2024-10-18 21:33 1.1M 
[IMG]aHeatmap_shared_otus_original.svg2024-10-18 21:12 1.0M 
[IMG]aHeatmap_shared_otus_rarefied.svg2024-10-18 21:12 1.0M 
[ ]diversity.xlsx2024-10-18 21:16 22K 
[DIR]filterAndTrim/2024-10-15 18:41 -  
[DIR]info/2024-10-16 12:06 -  
[ ]master.xlsx2024-10-16 12:06 2.8M 
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